CircRNA Information

General Information
circRNA Basic Information
CircID chr11:10490778|10491027
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTGTGAGCATTATGCCAGCCAGCCCATGTCGTTAGCCACAGCACTCACTCATCAGCATCCTTCCTGCCATTAATCTTGCCATTCTTACCAGAAAGACAGACCACTGGACACTGGGGAAACAAAGCAAAGCAGAAAACTAAAACATCCCCAAAGCCCAGGCTCCTCAGAGATGAGGCTGGGCTCACGTGGGATGCACAAAAGAAGGTCAGCCTGGCTCAGCTCAGCTGGACACAGCTTGGTACAATGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:10490778|10491027 hsa-miR-31-5p 0 0 1
chr11:10490778|10491027 hsa-miR-31-3p 0 0 1
chr11:10490778|10491027 hsa-miR-198 0 0 1
chr11:10490778|10491027 hsa-miR-155-5p 0 0 1
chr11:10490778|10491027 hsa-miR-155-3p 0 0 1
chr11:10490778|10491027 hsa-miR-511-5p 0 0 1
chr11:10490778|10491027 hsa-miR-511-3p 0 0 1
chr11:10490778|10491027 hsa-miR-558 0 0 1
chr11:10490778|10491027 hsa-miR-616-5p 0 0 1
chr11:10490778|10491027 hsa-miR-616-3p 0 0 1
chr11:10490778|10491027 hsa-miR-661 0 1 1
chr11:10490778|10491027 hsa-miR-662 0 1 1
chr11:10490778|10491027 hsa-miR-1178-5p 0 0 1
chr11:10490778|10491027 hsa-miR-1178-3p 0 0 1
chr11:10490778|10491027 hsa-miR-1248 0 0 1
chr11:10490778|10491027 hsa-miR-1825 0 0 1
chr11:10490778|10491027 hsa-miR-1225-3p 0 0 1
chr11:10490778|10491027 hsa-miR-512-3p 0 0 1
chr11:10490778|10491027 hsa-miR-324-5p 0 0 1
chr11:10490778|10491027 hsa-miR-199a-5p 0 1 1
chr11:10490778|10491027 hsa-miR-199b-5p 0 1 1
chr11:10490778|10491027 hsa-miR-1207-5p 1 0 1
chr11:10490778|10491027 hsa-miR-1233 0 0 1
chr11:10490778|10491027 hsa-miR-544 0 0 1
chr11:10490778|10491027 hsa-miR-564 1 0 0
chr11:10490778|10491027 hsa-miR-640 1 0 0
chr11:10490778|10491027 hsa-miR-1265 1 0 0
chr11:10490778|10491027 hsa-miR-1322 1 0 0
chr11:10490778|10491027 hsa-miR-2861 1 0 0
chr11:10490778|10491027 hsa-miR-3141 1 0 0
chr11:10490778|10491027 hsa-miR-3659 1 0 0
chr11:10490778|10491027 hsa-miR-3921 0 1 0
chr11:10490778|10491027 hsa-miR-378g 0 1 0
chr11:10490778|10491027 hsa-miR-4430 1 0 0
chr11:10490778|10491027 hsa-miR-4440 1 0 0
chr11:10490778|10491027 hsa-miR-4476 1 1 0
chr11:10490778|10491027 hsa-miR-4486 1 0 0
chr11:10490778|10491027 hsa-miR-4487 1 0 0
chr11:10490778|10491027 hsa-miR-4490 1 1 0
chr11:10490778|10491027 hsa-miR-4498 1 1 0
chr11:10490778|10491027 hsa-miR-4502 1 1 0
chr11:10490778|10491027 hsa-miR-2392 1 0 0
chr11:10490778|10491027 hsa-miR-4507 0 1 0
chr11:10490778|10491027 hsa-miR-4533 0 1 0
chr11:10490778|10491027 hsa-miR-1587 1 1 0
chr11:10490778|10491027 hsa-miR-4537 1 0 0
chr11:10490778|10491027 hsa-miR-4656 1 0 0
chr11:10490778|10491027 hsa-miR-4663 1 1 0
chr11:10490778|10491027 hsa-miR-4688 1 0 0
chr11:10490778|10491027 hsa-miR-4689 0 1 0
chr11:10490778|10491027 hsa-miR-4736 1 0 0
chr11:10490778|10491027 hsa-miR-4739 1 0 0
chr11:10490778|10491027 hsa-miR-4741 1 0 0
chr11:10490778|10491027 hsa-miR-6088 1 0 0
chr11:10490778|10491027 hsa-miR-6133 1 0 0
chr11:10490778|10491027 hsa-miR-7150 1 1 0
chr11:10490778|10491027 hsa-miR-7974 1 0 0
chr11:10490778|10491027 hsa-miR-8074 1 0 0
chr11:10490778|10491027 hsa-miR-8075 1 1 0
chr11:10490778|10491027 hsa-miR-8077 1 0 0
chr11:10490778|10491027 hsa-miR-8089 0 1 0
chr11:10490778|10491027 hsa-miR-9718 1 0 0
chr11:10490778|10491027 hsa-miR-12115 1 0 0
chr11:10490778|10491027 hsa-miR-12119 0 1 0
chr11:10490778|10491027 hsa-miR-105-3p 1 0 0
chr11:10490778|10491027 hsa-miR-3157-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6894-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4687-3p 1 0 0
chr11:10490778|10491027 hsa-miR-27a-5p 1 0 0
chr11:10490778|10491027 hsa-miR-219a-1-3p 1 0 0
chr11:10490778|10491027 hsa-miR-7114-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4722-5p 1 0 0
chr11:10490778|10491027 hsa-miR-3064-5p 0 1 0
chr11:10490778|10491027 hsa-miR-7160-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6741-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4474-3p 1 1 0
chr11:10490778|10491027 hsa-miR-6842-3p 1 1 0
chr11:10490778|10491027 hsa-miR-8069 1 0 0
chr11:10490778|10491027 hsa-miR-7108-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6793-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6829-5p 1 0 0
chr11:10490778|10491027 hsa-miR-7109-5p 1 0 0
chr11:10490778|10491027 hsa-miR-1226-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4640-5p 1 0 0
chr11:10490778|10491027 hsa-miR-296-3p 1 0 0
chr11:10490778|10491027 hsa-miR-3677-3p 1 0 0
chr11:10490778|10491027 hsa-miR-4717-3p 1 0 0
chr11:10490778|10491027 hsa-miR-6749-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4743-3p 0 1 0
chr11:10490778|10491027 hsa-miR-4743-5p 1 0 0
chr11:10490778|10491027 hsa-miR-3160-3p 1 1 0
chr11:10490778|10491027 hsa-miR-4446-3p 1 0 0
chr11:10490778|10491027 hsa-miR-149-3p 1 0 0
chr11:10490778|10491027 hsa-miR-937-5p 1 0 0
chr11:10490778|10491027 hsa-miR-1250-5p 1 0 0
chr11:10490778|10491027 hsa-miR-1251-3p 0 1 0
chr11:10490778|10491027 hsa-miR-628-3p 1 0 0
chr11:10490778|10491027 hsa-miR-2355-5p 0 1 0
chr11:10490778|10491027 hsa-miR-6885-3p 0 1 0
chr11:10490778|10491027 hsa-miR-1233-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4763-3p 1 0 0
chr11:10490778|10491027 hsa-miR-6778-5p 1 0 0
chr11:10490778|10491027 hsa-miR-5001-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6743-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6754-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6813-5p 1 0 0
chr11:10490778|10491027 hsa-miR-1249-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6751-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6797-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6879-5p 1 0 0
chr11:10490778|10491027 hsa-miR-3620-5p 1 1 0
chr11:10490778|10491027 hsa-miR-5196-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6780b-5p 1 0 0
chr11:10490778|10491027 hsa-miR-1909-3p 1 0 0
chr11:10490778|10491027 hsa-miR-4649-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4701-3p 1 0 0
chr11:10490778|10491027 hsa-miR-4726-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4745-3p 1 0 0
chr11:10490778|10491027 hsa-miR-4745-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6846-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6848-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4436b-3p 1 0 0
chr11:10490778|10491027 hsa-miR-939-5p 1 1 0
chr11:10490778|10491027 hsa-miR-4758-5p 1 0 0
chr11:10490778|10491027 hsa-miR-3940-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6856-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6736-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4646-5p 1 0 0
chr11:10490778|10491027 hsa-miR-4747-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6876-5p 0 1 0
chr11:10490778|10491027 hsa-miR-6891-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6790-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6753-3p 1 1 0
chr11:10490778|10491027 hsa-miR-7107-3p 1 1 0
chr11:10490778|10491027 hsa-miR-9851-5p 1 0 0
chr11:10490778|10491027 hsa-miR-3085-3p 0 1 0
chr11:10490778|10491027 hsa-miR-6884-5p 1 0 0
chr11:10490778|10491027 hsa-miR-6504-5p 1 1 0
chr11:10490778|10491027 hsa-miR-4799-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:10490778|10491027
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MDTGETKQSRKLKHPQSPGSSEMRLGSRGMHKRRSAWLSSAGHSLVQ
Nucleotide Sequence CTGGACACTGGGGAAACAAAGCAAAGCAGAAAACTAAAACATCCCCAAAGCCCAGGCTCCTCAGAGATGAGGCTGGGCTCACGTGGGATGCACAAAAGAAGGTCAGCCTGGCTCAGCTCAGCTGGACACAGCTTGGTACAATGA
CircID chr11:10490778|10491027
ORF Type ORF2
Protein Length 61
Nucleotide Length 183
Protein Sequence MPLILPFLPERQTTGHWGNKAKQKTKTSPKPRLLRDEAGLTWDAQKKVSLAQLSWTQLGTM
Nucleotide Sequence CTGCCATTAATCTTGCCATTCTTACCAGAAAGACAGACCACTGGACACTGGGGAAACAAAGCAAAGCAGAAAACTAAAACATCCCCAAAGCCCAGGCTCCTCAGAGATGAGGCTGGGCTCACGTGGGATGCACAAAAGAAGGTCAGCCTGGCTCAGCTCAGCTGGACACAGCTTGGTACAATG
CircID chr11:10490778|10491027
ORF Type ORF3
Protein Length 54
Nucleotide Length 165
Protein Sequence MTFFCASHVSPASSLRSLGFGDVLVFCFALFPQCPVVCLSGKNGKINGRKDADE
Nucleotide Sequence CTGACCTTCTTTTGTGCATCCCACGTGAGCCCAGCCTCATCTCTGAGGAGCCTGGGCTTTGGGGATGTTTTAGTTTTCTGCTTTGCTTTGTTTCCCCAGTGTCCAGTGGTCTGTCTTTCTGGTAAGAATGGCAAGATTAATGGCAGGAAGGATGCTGATGAGTGA
CircID chr11:10490778|10491027
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MLCFPSVQWSVFLVRMARLMAGRMLMSECCG
Nucleotide Sequence TTGCTTTGTTTCCCCAGTGTCCAGTGGTCTGTCTTTCTGGTAAGAATGGCAAGATTAATGGCAGGAAGGATGCTGATGAGTGAGTGCTGTGGCTAA
CircID chr11:10490778|10491027
ORF Type ORF5
Protein Length 49
Nucleotide Length 150
Protein Sequence MCPAELSQADLLLCIPREPSLISEEPGLWGCFSFLLCFVSPVSSGLSFW
Nucleotide Sequence CTGTGTCCAGCTGAGCTGAGCCAGGCTGACCTTCTTTTGTGCATCCCACGTGAGCCCAGCCTCATCTCTGAGGAGCCTGGGCTTTGGGGATGTTTTAGTTTTCTGCTTTGCTTTGTTTCCCCAGTGTCCAGTGGTCTGTCTTTCTGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab