CircRNA Information

General Information
circRNA Basic Information
CircID chr11:10797404|10797503
Strand -
CircType exon
Host Gene ENSG00000110321.14;
Algorism CIRI2;
Sequence CAAATGGATAATCAAATATTGCAACAACTCAAGTATTACTGAGCAAAGTGCATTTCTACAGTATTCAGTGTTGCTATTCAGTTTTCTAACTTAAAACAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:10797404|10797503 hsa-miR-200b-5p 0 0 1
chr11:10797404|10797503 hsa-miR-200b-3p 0 0 1
chr11:10797404|10797503 hsa-miR-141-5p 0 0 1
chr11:10797404|10797503 hsa-miR-141-3p 0 0 1
chr11:10797404|10797503 hsa-miR-200c-5p 0 0 1
chr11:10797404|10797503 hsa-miR-200c-3p 0 0 1
chr11:10797404|10797503 hsa-miR-200a-5p 0 0 1
chr11:10797404|10797503 hsa-miR-200a-3p 0 0 1
chr11:10797404|10797503 hsa-miR-429 0 0 1
chr11:10797404|10797503 hsa-miR-571 0 0 1
chr11:10797404|10797503 hsa-miR-1178-5p 0 0 1
chr11:10797404|10797503 hsa-miR-1178-3p 0 0 1
chr11:10797404|10797503 hsa-miR-1183 0 0 1
chr11:10797404|10797503 hsa-miR-548e-5p 0 0 1
chr11:10797404|10797503 hsa-miR-548e-3p 0 0 1
chr11:10797404|10797503 hsa-miR-548a-3p 0 0 1
chr11:10797404|10797503 hsa-miR-548f 0 0 1
chr11:10797404|10797503 hsa-miR-219-1-3p 0 0 1
chr11:10797404|10797503 hsa-miR-4325 0 1 0
chr11:10797404|10797503 hsa-miR-4427 0 1 0
chr11:10797404|10797503 hsa-miR-5585-3p 0 1 0
chr11:10797404|10797503 hsa-miR-3925-5p 0 1 0
chr11:10797404|10797503 hsa-miR-16-5p 0 1 0
chr11:10797404|10797503 hsa-miR-195-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:10797404|10797503
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MNSNTEYCRNALCSVILELLQYLIIHL
Nucleotide Sequence CTGAATAGCAACACTGAATACTGTAGAAATGCACTTTGCTCAGTAATACTTGAGTTGTTGCAATATTTGATTATCCATTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab