CircRNA Information

General Information
circRNA Basic Information
CircID chr11:108723340|108723462
Strand +
CircType exon
Host Gene ENSG00000178105.8;
Algorism CIRI2;
Sequence CTGTAATGTTTTCTCGTCTTTAAGGTCCAATCCAAACACATTATGCCGCTTCACCTTCAAGAAATCAGCATCTTCTTCCTCCTCATCTCTGTCCAAGAACTGTGTAGGAACTTCCTTGATCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:108723340|108723462 hsa-miR-143-5p 0 0 1
chr11:108723340|108723462 hsa-miR-143-3p 0 0 1
chr11:108723340|108723462 hsa-miR-492 0 0 1
chr11:108723340|108723462 hsa-miR-493-5p 0 0 1
chr11:108723340|108723462 hsa-miR-493-3p 0 0 1
chr11:108723340|108723462 hsa-miR-432-5p 0 0 1
chr11:108723340|108723462 hsa-miR-432-3p 0 0 1
chr11:108723340|108723462 hsa-miR-526b-5p 0 0 1
chr11:108723340|108723462 hsa-miR-526b-3p 0 0 1
chr11:108723340|108723462 hsa-miR-570-5p 0 0 1
chr11:108723340|108723462 hsa-miR-570-3p 0 0 1
chr11:108723340|108723462 hsa-miR-578 0 0 1
chr11:108723340|108723462 hsa-miR-323-3p 0 0 1
chr11:108723340|108723462 hsa-miR-184 1 0 0
chr11:108723340|108723462 hsa-miR-765 1 0 0
chr11:108723340|108723462 hsa-miR-3138 1 0 0
chr11:108723340|108723462 hsa-miR-3147 1 0 0
chr11:108723340|108723462 hsa-miR-4298 1 0 0
chr11:108723340|108723462 hsa-miR-3916 1 0 0
chr11:108723340|108723462 hsa-miR-4507 1 0 0
chr11:108723340|108723462 hsa-miR-4510 1 0 0
chr11:108723340|108723462 hsa-miR-4525 1 0 0
chr11:108723340|108723462 hsa-miR-3960 1 0 0
chr11:108723340|108723462 hsa-miR-4656 1 0 0
chr11:108723340|108723462 hsa-miR-4672 1 0 0
chr11:108723340|108723462 hsa-miR-4739 1 0 0
chr11:108723340|108723462 hsa-miR-6088 1 0 0
chr11:108723340|108723462 hsa-miR-6745 1 0 0
chr11:108723340|108723462 hsa-miR-12118 1 0 0
chr11:108723340|108723462 hsa-miR-6734-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6765-5p 1 0 0
chr11:108723340|108723462 hsa-miR-7106-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6825-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6894-5p 1 0 0
chr11:108723340|108723462 hsa-miR-766-5p 1 0 0
chr11:108723340|108723462 hsa-miR-5187-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6757-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6880-5p 1 0 0
chr11:108723340|108723462 hsa-miR-7847-3p 1 0 0
chr11:108723340|108723462 hsa-miR-6746-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6760-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6740-5p 1 0 0
chr11:108723340|108723462 hsa-miR-1229-5p 1 0 0
chr11:108723340|108723462 hsa-miR-423-5p 1 0 0
chr11:108723340|108723462 hsa-miR-1343-5p 1 0 0
chr11:108723340|108723462 hsa-miR-5001-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6851-5p 1 0 0
chr11:108723340|108723462 hsa-miR-11181-3p 1 0 0
chr11:108723340|108723462 hsa-miR-1249-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6774-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6788-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6797-5p 1 0 0
chr11:108723340|108723462 hsa-miR-7111-5p 1 0 0
chr11:108723340|108723462 hsa-miR-3620-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6735-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6794-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6858-5p 1 0 0
chr11:108723340|108723462 hsa-miR-4758-5p 1 0 0
chr11:108723340|108723462 hsa-miR-4667-5p 1 0 0
chr11:108723340|108723462 hsa-miR-6884-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:108723340|108723462
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MPLHLQEISIFFLLISVQELCRNFLDL
Nucleotide Sequence ATGCCGCTTCACCTTCAAGAAATCAGCATCTTCTTCCTCCTCATCTCTGTCCAAGAACTGTGTAGGAACTTCCTTGATCTT
CircID chr11:108723340|108723462
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MDRDEEEEDADFLKVKRHNVFGLDLKDEKTLQ
Nucleotide Sequence TTGGACAGAGATGAGGAGGAAGAAGATGCTGATTTCTTGAAGGTGAAGCGGCATAATGTGTTTGGATTGGACCTTAAAGACGAGAAAACATTACAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab