CircRNA Information

General Information
circRNA Basic Information
CircID chr11:1109338|1109923
Strand +
CircType exon
Host Gene ENSG00000198788.8;
Algorism CIRI2;
Sequence CCTGGTCTCATTGCGAGGGGTGCAGGTCTTGCAGCATCCATTGGGCATGAATGTGATGGAGCCCTAGAGGGAAAGGAGAATGAGCCCGGGACCCCCGGACATTCCTGGGGATGAGAGCACCTTCCCACGATGCCGTGGGCGGGGGTAGCTGCTGCAGAAAGCCCCAGGCAAAGCCTCCTGCGGCAGCTCAGACCAGGCCCGAGGTCACTGTCGCAGCACTGGGGCCCCAGCCCCCCAGAACACCAGGCACCCCCACTCCCGGCAGAGTACACACAGCCAGGCCCCAGGTGGCCAACTCACCGGGATGCAAATGCTGGCATCAAAGTTGGGGCAGGTGATGTTGGAGACGGACGAGATGAGCTGGTTGTGGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:1109338|1109923 hsa-miR-18a-5p 0 0 1
chr11:1109338|1109923 hsa-miR-18a-3p 0 0 1
chr11:1109338|1109923 hsa-miR-22-5p 0 0 1
chr11:1109338|1109923 hsa-miR-22-3p 0 0 1
chr11:1109338|1109923 hsa-miR-23a-5p 0 0 1
chr11:1109338|1109923 hsa-miR-23a-3p 0 0 1
chr11:1109338|1109923 hsa-miR-107 0 0 1
chr11:1109338|1109923 hsa-miR-181c-5p 0 0 1
chr11:1109338|1109923 hsa-miR-181c-3p 0 0 1
chr11:1109338|1109923 hsa-miR-23b-5p 0 0 1
chr11:1109338|1109923 hsa-miR-23b-3p 0 0 1
chr11:1109338|1109923 hsa-miR-206 0 0 1
chr11:1109338|1109923 hsa-miR-18b-5p 0 0 1
chr11:1109338|1109923 hsa-miR-18b-3p 0 0 1
chr11:1109338|1109923 hsa-miR-181d-5p 0 0 1
chr11:1109338|1109923 hsa-miR-181d-3p 0 0 1
chr11:1109338|1109923 hsa-miR-558 0 1 1
chr11:1109338|1109923 hsa-miR-571 0 1 1
chr11:1109338|1109923 hsa-miR-588 0 1 1
chr11:1109338|1109923 hsa-miR-613 0 0 1
chr11:1109338|1109923 hsa-miR-637 1 1 1
chr11:1109338|1109923 hsa-miR-646 0 1 1
chr11:1109338|1109923 hsa-miR-661 1 1 1
chr11:1109338|1109923 hsa-miR-1202 0 0 1
chr11:1109338|1109923 hsa-miR-1205 0 1 1
chr11:1109338|1109923 hsa-miR-1825 0 0 1
chr11:1109338|1109923 hsa-miR-769-5p 1 0 1
chr11:1109338|1109923 hsa-miR-296-5p 0 0 1
chr11:1109338|1109923 hsa-miR-512-3p 0 1 1
chr11:1109338|1109923 hsa-miR-615-5p 1 1 1
chr11:1109338|1109923 hsa-miR-324-5p 0 0 1
chr11:1109338|1109923 hsa-miR-1184 0 0 1
chr11:1109338|1109923 hsa-miR-338-3p 0 0 1
chr11:1109338|1109923 hsa-miR-324-3p 0 0 1
chr11:1109338|1109923 hsa-miR-342-5p 0 0 1
chr11:1109338|1109923 hsa-miR-515-5p 0 0 1
chr11:1109338|1109923 hsa-miR-550 0 0 1
chr11:1109338|1109923 hsa-miR-642 0 0 1
chr11:1109338|1109923 hsa-miR-103 0 0 1
chr11:1109338|1109923 hsa-miR-181a 0 0 1
chr11:1109338|1109923 hsa-miR-181b 0 0 1
chr11:1109338|1109923 hsa-miR-1 0 0 1
chr11:1109338|1109923 hsa-miR-544 0 0 1
chr11:1109338|1109923 hsa-miR-1254 0 0 1
chr11:1109338|1109923 hsa-miR-219-1-3p 0 0 1
chr11:1109338|1109923 hsa-miR-499-3p 0 0 1
chr11:1109338|1109923 hsa-miR-601 1 0 0
chr11:1109338|1109923 hsa-miR-608 1 0 0
chr11:1109338|1109923 hsa-miR-762 1 1 0
chr11:1109338|1109923 hsa-miR-1268a 1 0 0
chr11:1109338|1109923 hsa-miR-1538 1 0 0
chr11:1109338|1109923 hsa-miR-1913 0 1 0
chr11:1109338|1109923 hsa-miR-2861 1 1 0
chr11:1109338|1109923 hsa-miR-3188 0 1 0
chr11:1109338|1109923 hsa-miR-4303 0 1 0
chr11:1109338|1109923 hsa-miR-4322 1 0 0
chr11:1109338|1109923 hsa-miR-4281 0 1 0
chr11:1109338|1109923 hsa-miR-3909 1 0 0
chr11:1109338|1109923 hsa-miR-1268b 1 0 0
chr11:1109338|1109923 hsa-miR-4447 0 1 0
chr11:1109338|1109923 hsa-miR-4469 1 1 0
chr11:1109338|1109923 hsa-miR-4481 1 0 0
chr11:1109338|1109923 hsa-miR-4498 1 1 0
chr11:1109338|1109923 hsa-miR-4651 1 0 0
chr11:1109338|1109923 hsa-miR-4656 1 0 0
chr11:1109338|1109923 hsa-miR-4686 1 0 0
chr11:1109338|1109923 hsa-miR-4741 1 0 0
chr11:1109338|1109923 hsa-miR-5572 1 0 0
chr11:1109338|1109923 hsa-miR-5690 0 1 0
chr11:1109338|1109923 hsa-miR-5787 0 1 0
chr11:1109338|1109923 hsa-miR-7974 1 1 0
chr11:1109338|1109923 hsa-miR-11400 1 0 0
chr11:1109338|1109923 hsa-miR-370-3p 1 0 0
chr11:1109338|1109923 hsa-miR-4433b-3p 1 0 0
chr11:1109338|1109923 hsa-miR-6840-3p 0 1 0
chr11:1109338|1109923 hsa-miR-504-3p 1 0 0
chr11:1109338|1109923 hsa-miR-7155-5p 1 0 0
chr11:1109338|1109923 hsa-miR-4433a-3p 1 0 0
chr11:1109338|1109923 hsa-miR-4687-3p 1 0 0
chr11:1109338|1109923 hsa-miR-7851-3p 0 1 0
chr11:1109338|1109923 hsa-miR-1227-5p 0 1 0
chr11:1109338|1109923 hsa-miR-4786-5p 0 1 0
chr11:1109338|1109923 hsa-miR-6746-5p 1 0 0
chr11:1109338|1109923 hsa-miR-4722-5p 1 1 0
chr11:1109338|1109923 hsa-miR-3064-5p 0 1 0
chr11:1109338|1109923 hsa-miR-6820-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6875-3p 1 0 0
chr11:1109338|1109923 hsa-miR-3187-3p 1 0 0
chr11:1109338|1109923 hsa-miR-3663-5p 0 1 0
chr11:1109338|1109923 hsa-miR-6742-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6716-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6871-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6793-5p 1 0 0
chr11:1109338|1109923 hsa-miR-185-3p 0 1 0
chr11:1109338|1109923 hsa-miR-6732-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6782-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6765-3p 0 1 0
chr11:1109338|1109923 hsa-miR-6821-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6884-3p 1 0 0
chr11:1109338|1109923 hsa-miR-1343-3p 1 0 0
chr11:1109338|1109923 hsa-miR-6786-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6852-5p 0 1 0
chr11:1109338|1109923 hsa-miR-939-3p 1 0 0
chr11:1109338|1109923 hsa-miR-7109-5p 0 1 0
chr11:1109338|1109923 hsa-miR-4783-3p 1 1 0
chr11:1109338|1109923 hsa-miR-4640-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6771-5p 1 0 0
chr11:1109338|1109923 hsa-miR-4717-3p 1 0 0
chr11:1109338|1109923 hsa-miR-6749-5p 1 1 0
chr11:1109338|1109923 hsa-miR-4787-5p 1 1 0
chr11:1109338|1109923 hsa-miR-4446-3p 1 0 0
chr11:1109338|1109923 hsa-miR-149-3p 1 0 0
chr11:1109338|1109923 hsa-miR-194-3p 1 0 0
chr11:1109338|1109923 hsa-miR-181b-5p 0 1 0
chr11:1109338|1109923 hsa-miR-6870-3p 1 1 0
chr11:1109338|1109923 hsa-miR-4708-3p 1 0 0
chr11:1109338|1109923 hsa-miR-1250-5p 0 1 0
chr11:1109338|1109923 hsa-miR-3158-3p 1 0 0
chr11:1109338|1109923 hsa-miR-6758-3p 0 1 0
chr11:1109338|1109923 hsa-miR-3160-5p 0 1 0
chr11:1109338|1109923 hsa-miR-3675-5p 0 1 0
chr11:1109338|1109923 hsa-miR-4645-3p 1 0 0
chr11:1109338|1109923 hsa-miR-3680-3p 0 1 0
chr11:1109338|1109923 hsa-miR-329-5p 0 1 0
chr11:1109338|1109923 hsa-miR-4763-3p 1 0 0
chr11:1109338|1109923 hsa-miR-6816-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6775-5p 1 0 0
chr11:1109338|1109923 hsa-miR-5001-5p 0 1 0
chr11:1109338|1109923 hsa-miR-6726-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6752-5p 1 1 0
chr11:1109338|1109923 hsa-miR-6756-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6803-5p 1 1 0
chr11:1109338|1109923 hsa-miR-6813-5p 1 1 0
chr11:1109338|1109923 hsa-miR-7107-5p 1 0 0
chr11:1109338|1109923 hsa-miR-7110-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6751-5p 1 1 0
chr11:1109338|1109923 hsa-miR-6763-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6754-3p 1 0 0
chr11:1109338|1109923 hsa-miR-3620-5p 1 0 0
chr11:1109338|1109923 hsa-miR-328-5p 1 1 0
chr11:1109338|1109923 hsa-miR-4745-5p 1 1 0
chr11:1109338|1109923 hsa-miR-6846-5p 0 1 0
chr11:1109338|1109923 hsa-miR-6848-5p 1 1 0
chr11:1109338|1109923 hsa-miR-6889-5p 1 0 0
chr11:1109338|1109923 hsa-miR-939-5p 1 1 0
chr11:1109338|1109923 hsa-miR-1238-5p 1 0 0
chr11:1109338|1109923 hsa-miR-4758-5p 1 0 0
chr11:1109338|1109923 hsa-miR-3085-5p 1 0 0
chr11:1109338|1109923 hsa-miR-3940-5p 1 0 0
chr11:1109338|1109923 hsa-miR-4747-5p 0 1 0
chr11:1109338|1109923 hsa-miR-4472 0 1 0
chr11:1109338|1109923 hsa-miR-6791-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6753-3p 1 0 0
chr11:1109338|1109923 hsa-miR-550a-5p 1 0 0
chr11:1109338|1109923 hsa-miR-6783-3p 1 1 0
chr11:1109338|1109923 hsa-miR-6827-3p 0 1 0
chr11:1109338|1109923 hsa-miR-6504-5p 1 1 0
chr11:1109338|1109923 hsa-miR-372-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:1109338|1109923
ORF Type ORF1
Protein Length 81
Nucleotide Length 243
Protein Sequence MPWAGVAAAESPRQSLLRQLRPGPRSLSQHWGPSPPEHQAPPLPAEYTQPGPRWPTHRDANAGIKVGAGDVGDGRDELVVD
Nucleotide Sequence ATGCCGTGGGCGGGGGTAGCTGCTGCAGAAAGCCCCAGGCAAAGCCTCCTGCGGCAGCTCAGACCAGGCCCGAGGTCACTGTCGCAGCACTGGGGCCCCAGCCCCCCAGAACACCAGGCACCCCCACTCCCGGCAGAGTACACACAGCCAGGCCCCAGGTGGCCAACTCACCGGGATGCAAATGCTGGCATCAAAGTTGGGGCAGGTGATGTTGGAGACGGACGAGATGAGCTGGTTGTGGAT
CircID chr11:1109338|1109923
ORF Type ORF2
Protein Length 74
Nucleotide Length 222
Protein Sequence MLQKAPGKASCGSSDQARGHCRSTGAPAPQNTRHPHSRQSTHSQAPGGQLTGMQMLASKLGQVMLETDEMSWLW
Nucleotide Sequence CTGCTGCAGAAAGCCCCAGGCAAAGCCTCCTGCGGCAGCTCAGACCAGGCCCGAGGTCACTGTCGCAGCACTGGGGCCCCAGCCCCCCAGAACACCAGGCACCCCCACTCCCGGCAGAGTACACACAGCCAGGCCCCAGGTGGCCAACTCACCGGGATGCAAATGCTGGCATCAAAGTTGGGGCAGGTGATGTTGGAGACGGACGAGATGAGCTGGTTGTGG
CircID chr11:1109338|1109923
ORF Type ORF3
Protein Length 77
Nucleotide Length 234
Protein Sequence MGMRAPSHDAVGGGSCCRKPQAKPPAAAQTRPEVTVAALGPQPPRTPGTPTPGRVHTARPQVANSPGCKCWHQSWGR
Nucleotide Sequence CTGGGGATGAGAGCACCTTCCCACGATGCCGTGGGCGGGGGTAGCTGCTGCAGAAAGCCCCAGGCAAAGCCTCCTGCGGCAGCTCAGACCAGGCCCGAGGTCACTGTCGCAGCACTGGGGCCCCAGCCCCCCAGAACACCAGGCACCCCCACTCCCGGCAGAGTACACACAGCCAGGCCCCAGGTGGCCAACTCACCGGGATGCAAATGCTGGCATCAAAGTTGGGGCAGGTGA
CircID chr11:1109338|1109923
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MPQEALPGAFCSSYPRPRHRGKVLSSPGMSGGPGLILLSL
Nucleotide Sequence CTGCCGCAGGAGGCTTTGCCTGGGGCTTTCTGCAGCAGCTACCCCCGCCCACGGCATCGTGGGAAGGTGCTCTCATCCCCAGGAATGTCCGGGGGTCCCGGGCTCATTCTCCTTTCCCTCTAG
CircID chr11:1109338|1109923
ORF Type ORF5
Protein Length 95
Nucleotide Length 285
Protein Sequence MGPGCVYSAGSGGAWCSGGLGPQCCDSDLGPGLSCRRRLCLGLSAAATPAHGIVGRCSHPQECPGVPGSFSFPSRAPSHSCPMDAARPAPLAMRP
Nucleotide Sequence CTGGGGCCTGGCTGTGTGTACTCTGCCGGGAGTGGGGGTGCCTGGTGTTCTGGGGGGCTGGGGCCCCAGTGCTGCGACAGTGACCTCGGGCCTGGTCTGAGCTGCCGCAGGAGGCTTTGCCTGGGGCTTTCTGCAGCAGCTACCCCCGCCCACGGCATCGTGGGAAGGTGCTCTCATCCCCAGGAATGTCCGGGGGTCCCGGGCTCATTCTCCTTTCCCTCTAGGGCTCCATCACATTCATGCCCAATGGATGCTGCAAGACCTGCACCCCTCGCAATGAGACCA
CircID chr11:1109338|1109923
ORF Type ORF6
Protein Length 40
Nucleotide Length 123
Protein Sequence MHPGELATWGLAVCTLPGVGVPGVLGGWGPSAATVTSGLV
Nucleotide Sequence TTGCATCCCGGTGAGTTGGCCACCTGGGGCCTGGCTGTGTGTACTCTGCCGGGAGTGGGGGTGCCTGGTGTTCTGGGGGGCTGGGGCCCCAGTGCTGCGACAGTGACCTCGGGCCTGGTCTGA
CircID chr11:1109338|1109923
ORF Type ORF7
Protein Length 49
Nucleotide Length 150
Protein Sequence MQQLPPPTASWEGALIPRNVRGSRAHSPFPLGLHHIHAQWMLQDLHPSQ
Nucleotide Sequence CTGCAGCAGCTACCCCCGCCCACGGCATCGTGGGAAGGTGCTCTCATCCCCAGGAATGTCCGGGGGTCCCGGGCTCATTCTCCTTTCCCTCTAGGGCTCCATCACATTCATGCCCAATGGATGCTGCAAGACCTGCACCCCTCGCAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab