CircRNA Information

General Information
circRNA Basic Information
CircID chr11:114063211|114187038
Strand +
CircType exon
Host Gene ENSG00000109906.13;
Algorism CIRI2;find_circ;DCC;
Sequence GAAGCTGCACAGTGGGATGAAGACGTACGGGTGCGAGCTCTGCGGGAAGCGGTTCCTGGATAGTTTGCGGCTGAGAATGCACTTACTGGCTCATTCAGCGGGTGCCAAAGCCTTTGTCTGTGATCAGTGCGGTGCACAGTTTTCGAAGGAGGATGCCCTGGAGACACACAGGCAGACCCATACTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
Target Genes
       

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)
CircID chr11:114063211|114187038
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MKTYGCELCGKRFLDSLRLRMHLLAHSAGAKAFVCDQCGAQFSKEDALETHRQTHT
Nucleotide Sequence ATGAAGACGTACGGGTGCGAGCTCTGCGGGAAGCGGTTCCTGGATAGTTTGCGGCTGAGAATGCACTTACTGGCTCATTCAGCGGGTGCCAAAGCCTTTGTCTGTGATCAGTGCGGTGCACAGTTTTCGAAGGAGGATGCCCTGGAGACACACAGGCAGACCCATACT

CircID chr11:114063211|114187038
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence VSPGHPPSKTVHRTDHRQRLWHPLNEPVSAFSAANYPGTASRRARTRTSSSHCAA
Nucleotide Sequence GTGTCTCCAGGGCATCCTCCTTCGAAAACTGTGCACCGCACTGATCACAGACAAAGGCTTTGGCACCCGCTGAATGAGCCAGTAAGTGCATTCTCAGCCGCAAACTATCCAGGAACCGCTTCCCGCAGAGCTCGCACCCGTACGTCTTCATCCCACTGTGCAGCT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr11:114063211|114187038 FUS 1 8 0
chr11:114063211|114187038 U2AF2 0 4 0
chr11:114063211|114187038 RBM10 0 1 0
chr11:114063211|114187038 HNRNPL 1 0 0
chr11:114063211|114187038 TAF15 0 4 0
chr11:114063211|114187038 HNRNPC 1 0 0