CircRNA Information

General Information
circRNA Basic Information
CircID chr11:117197856|117197993
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTGGTTGTGTTCTGAATTCAACAGATTCCTTGGCCCCCAAATCATGTCCTCCTTAGCCGACTGAAGTCTAAATGAATCTTTCAGGGACATATCAAAACTCCCTCCTCTTGGAGCCTGCCCAGCTTTCATCACCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:117197856|117197993 hsa-miR-320a-5p 0 0 1
chr11:117197856|117197993 hsa-miR-320a-3p 0 0 1
chr11:117197856|117197993 hsa-miR-484 0 0 1
chr11:117197856|117197993 hsa-miR-579-5p 0 0 1
chr11:117197856|117197993 hsa-miR-579-3p 0 0 1
chr11:117197856|117197993 hsa-miR-612 1 1 1
chr11:117197856|117197993 hsa-miR-653-5p 0 0 1
chr11:117197856|117197993 hsa-miR-653-3p 0 0 1
chr11:117197856|117197993 hsa-miR-190b-5p 0 0 1
chr11:117197856|117197993 hsa-miR-190b-3p 0 0 1
chr11:117197856|117197993 hsa-miR-1267 0 0 1
chr11:117197856|117197993 hsa-miR-1275 0 0 1
chr11:117197856|117197993 hsa-miR-320b 1 1 1
chr11:117197856|117197993 hsa-miR-320c 1 1 1
chr11:117197856|117197993 hsa-miR-125a-5p 0 0 1
chr11:117197856|117197993 hsa-miR-320d 1 1 1
chr11:117197856|117197993 hsa-miR-125b 0 0 1
chr11:117197856|117197993 hsa-miR-664 0 0 1
chr11:117197856|117197993 hsa-miR-1285 0 0 1
chr11:117197856|117197993 hsa-miR-151-3p 0 0 1
chr11:117197856|117197993 hsa-miR-190 0 0 1
chr11:117197856|117197993 hsa-miR-622 1 0 0
chr11:117197856|117197993 hsa-miR-637 1 0 0
chr11:117197856|117197993 hsa-miR-3141 1 0 0
chr11:117197856|117197993 hsa-miR-3147 1 1 0
chr11:117197856|117197993 hsa-miR-3155a 0 1 0
chr11:117197856|117197993 hsa-miR-4253 1 0 0
chr11:117197856|117197993 hsa-miR-3937 1 0 0
chr11:117197856|117197993 hsa-miR-4429 1 1 0
chr11:117197856|117197993 hsa-miR-3155b 0 1 0
chr11:117197856|117197993 hsa-miR-4510 0 1 0
chr11:117197856|117197993 hsa-miR-4656 1 0 0
chr11:117197856|117197993 hsa-miR-4689 1 1 0
chr11:117197856|117197993 hsa-miR-4721 1 0 0
chr11:117197856|117197993 hsa-miR-4739 1 0 0
chr11:117197856|117197993 hsa-miR-5572 1 0 0
chr11:117197856|117197993 hsa-miR-5787 1 0 0
chr11:117197856|117197993 hsa-miR-6070 1 0 0
chr11:117197856|117197993 hsa-miR-6088 1 0 0
chr11:117197856|117197993 hsa-miR-6129 0 1 0
chr11:117197856|117197993 hsa-miR-6130 0 1 0
chr11:117197856|117197993 hsa-miR-6860 1 1 0
chr11:117197856|117197993 hsa-miR-12118 0 1 0
chr11:117197856|117197993 hsa-miR-6765-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6861-5p 1 0 0
chr11:117197856|117197993 hsa-miR-7106-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6894-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6799-5p 1 0 0
chr11:117197856|117197993 hsa-miR-7114-5p 1 0 0
chr11:117197856|117197993 hsa-miR-7154-3p 1 1 0
chr11:117197856|117197993 hsa-miR-6721-5p 1 1 0
chr11:117197856|117197993 hsa-miR-6827-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6798-5p 1 0 0
chr11:117197856|117197993 hsa-miR-1226-5p 1 0 0
chr11:117197856|117197993 hsa-miR-1229-5p 1 1 0
chr11:117197856|117197993 hsa-miR-4640-5p 1 1 0
chr11:117197856|117197993 hsa-miR-6771-5p 1 0 0
chr11:117197856|117197993 hsa-miR-664b-5p 1 1 0
chr11:117197856|117197993 hsa-miR-1225-5p 1 0 0
chr11:117197856|117197993 hsa-miR-4638-5p 0 1 0
chr11:117197856|117197993 hsa-miR-589-3p 0 1 0
chr11:117197856|117197993 hsa-miR-4740-3p 1 0 0
chr11:117197856|117197993 hsa-miR-1207-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6816-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6870-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6754-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6756-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6803-5p 1 0 0
chr11:117197856|117197993 hsa-miR-11181-3p 1 0 0
chr11:117197856|117197993 hsa-miR-1249-5p 0 1 0
chr11:117197856|117197993 hsa-miR-6751-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6774-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6797-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6879-5p 1 0 0
chr11:117197856|117197993 hsa-miR-5189-5p 1 1 0
chr11:117197856|117197993 hsa-miR-328-5p 1 0 0
chr11:117197856|117197993 hsa-miR-4701-3p 1 0 0
chr11:117197856|117197993 hsa-miR-4726-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6794-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6846-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6848-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6858-5p 1 0 0
chr11:117197856|117197993 hsa-miR-3187-5p 1 0 0
chr11:117197856|117197993 hsa-miR-3173-3p 1 0 0
chr11:117197856|117197993 hsa-miR-3679-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6891-5p 1 0 0
chr11:117197856|117197993 hsa-miR-6762-5p 1 1 0
chr11:117197856|117197993 hsa-miR-892c-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:117197856|117197993
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MKAGQAPRGGSFDMSLKDSFRLQSAKEDMIWGPRNLLNSEHNQ
Nucleotide Sequence ATGAAAGCTGGGCAGGCTCCAAGAGGAGGGAGTTTTGATATGTCCCTGAAAGATTCATTTAGACTTCAGTCGGCTAAGGAGGACATGATTTGGGGGCCAAGGAATCTGTTGAATTCAGAACACAACCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab