CircRNA Information

General Information
circRNA Basic Information
CircID chr11:118534933|118535192
Strand -
CircType exon
Host Gene ENSG00000149582.14;
Algorism CIRI2;
Sequence CCCAGTACTCCACAGCACCTTGTACAGTAGGCATGGGGGCGTGCCTGTGTGGGGGACAGGGAGGGCCCTGCATGGATTTTCCTCCTTCCTATGCTATGTAGCCTTGTTCCCTCAGGTAAAATTTAGGACCCTGCTAGCTGTGCAGAACCCAATTGCCCTTTGCACAGAAACCAACCCCTGACCCAGCGGTACCGGCCAAGCACAAACGTCCTTTTTGCTGCACACGTCTCTGCCCTTCACTTCTTCTCTTCTGTCCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:118534933|118535192 hsa-miR-18a-5p 0 0 1
chr11:118534933|118535192 hsa-miR-18a-3p 0 0 1
chr11:118534933|118535192 hsa-miR-19a-5p 0 0 1
chr11:118534933|118535192 hsa-miR-19a-3p 0 0 1
chr11:118534933|118535192 hsa-miR-107 0 0 1
chr11:118534933|118535192 hsa-miR-221-5p 0 0 1
chr11:118534933|118535192 hsa-miR-221-3p 0 0 1
chr11:118534933|118535192 hsa-miR-222-5p 0 0 1
chr11:118534933|118535192 hsa-miR-222-3p 0 0 1
chr11:118534933|118535192 hsa-miR-376c-5p 0 0 1
chr11:118534933|118535192 hsa-miR-376c-3p 0 0 1
chr11:118534933|118535192 hsa-miR-18b-5p 0 0 1
chr11:118534933|118535192 hsa-miR-18b-3p 0 0 1
chr11:118534933|118535192 hsa-miR-527 0 0 1
chr11:118534933|118535192 hsa-miR-545-5p 0 0 1
chr11:118534933|118535192 hsa-miR-545-3p 0 0 1
chr11:118534933|118535192 hsa-miR-621 0 0 1
chr11:118534933|118535192 hsa-miR-624-5p 0 0 1
chr11:118534933|118535192 hsa-miR-624-3p 0 0 1
chr11:118534933|118535192 hsa-miR-636 0 0 1
chr11:118534933|118535192 hsa-miR-1183 1 0 1
chr11:118534933|118535192 hsa-miR-1253 0 0 1
chr11:118534933|118535192 hsa-miR-548p 0 0 1
chr11:118534933|118535192 hsa-miR-1278 0 0 1
chr11:118534933|118535192 hsa-miR-491-5p 0 0 1
chr11:118534933|118535192 hsa-miR-339-5p 0 0 1
chr11:118534933|118535192 hsa-miR-361-3p 0 0 1
chr11:118534933|118535192 hsa-miR-513a-3p 0 0 1
chr11:118534933|118535192 hsa-miR-518a-5p 0 0 1
chr11:118534933|118535192 hsa-miR-590-3p 0 0 1
chr11:118534933|118535192 hsa-miR-1274a 0 0 1
chr11:118534933|118535192 hsa-miR-103 0 0 1
chr11:118534933|118535192 hsa-miR-1274b 0 0 1
chr11:118534933|118535192 hsa-miR-19b 0 0 1
chr11:118534933|118535192 hsa-miR-218 0 0 1
chr11:118534933|118535192 hsa-miR-544 0 0 1
chr11:118534933|118535192 hsa-miR-184 1 0 0
chr11:118534933|118535192 hsa-miR-638 1 0 0
chr11:118534933|118535192 hsa-miR-645 1 0 0
chr11:118534933|118535192 hsa-miR-762 1 0 0
chr11:118534933|118535192 hsa-miR-3125 1 0 0
chr11:118534933|118535192 hsa-miR-3132 1 0 0
chr11:118534933|118535192 hsa-miR-3138 1 0 0
chr11:118534933|118535192 hsa-miR-3154 1 0 0
chr11:118534933|118535192 hsa-miR-3175 1 0 0
chr11:118534933|118535192 hsa-miR-3185 1 0 0
chr11:118534933|118535192 hsa-miR-4298 1 0 0
chr11:118534933|118535192 hsa-miR-4259 1 0 0
chr11:118534933|118535192 hsa-miR-3945 1 0 0
chr11:118534933|118535192 hsa-miR-4489 1 0 0
chr11:118534933|118535192 hsa-miR-4507 1 0 0
chr11:118534933|118535192 hsa-miR-4516 1 0 0
chr11:118534933|118535192 hsa-miR-1587 1 0 0
chr11:118534933|118535192 hsa-miR-4656 1 0 0
chr11:118534933|118535192 hsa-miR-4688 1 0 0
chr11:118534933|118535192 hsa-miR-4689 1 0 0
chr11:118534933|118535192 hsa-miR-4739 1 0 0
chr11:118534933|118535192 hsa-miR-5090 1 0 0
chr11:118534933|118535192 hsa-miR-6081 1 0 0
chr11:118534933|118535192 hsa-miR-6088 1 0 0
chr11:118534933|118535192 hsa-miR-6127 1 0 0
chr11:118534933|118535192 hsa-miR-6165 1 0 0
chr11:118534933|118535192 hsa-miR-7515 1 0 0
chr11:118534933|118535192 hsa-miR-7704 1 0 0
chr11:118534933|118535192 hsa-miR-8085 1 0 0
chr11:118534933|118535192 hsa-miR-12119 1 0 0
chr11:118534933|118535192 hsa-miR-143-5p 1 0 0
chr11:118534933|118535192 hsa-miR-4433b-3p 1 0 0
chr11:118534933|118535192 hsa-miR-504-3p 1 0 0
chr11:118534933|118535192 hsa-miR-4433a-3p 1 0 0
chr11:118534933|118535192 hsa-miR-6857-5p 1 0 0
chr11:118534933|118535192 hsa-miR-25-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6799-5p 1 0 0
chr11:118534933|118535192 hsa-miR-3692-5p 1 0 0
chr11:118534933|118535192 hsa-miR-139-3p 1 0 0
chr11:118534933|118535192 hsa-miR-4653-3p 1 0 0
chr11:118534933|118535192 hsa-miR-4709-3p 1 0 0
chr11:118534933|118535192 hsa-miR-6727-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6721-5p 1 0 0
chr11:118534933|118535192 hsa-miR-197-5p 1 0 0
chr11:118534933|118535192 hsa-miR-7845-5p 1 0 0
chr11:118534933|118535192 hsa-miR-3151-5p 1 0 0
chr11:118534933|118535192 hsa-miR-1292-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6772-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6798-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6810-5p 1 0 0
chr11:118534933|118535192 hsa-miR-7109-5p 1 0 0
chr11:118534933|118535192 hsa-miR-1226-5p 1 0 0
chr11:118534933|118535192 hsa-miR-92b-5p 1 0 0
chr11:118534933|118535192 hsa-miR-877-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6847-5p 1 0 0
chr11:118534933|118535192 hsa-miR-4743-5p 1 0 0
chr11:118534933|118535192 hsa-miR-149-3p 1 0 0
chr11:118534933|118535192 hsa-miR-550b-2-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6781-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6877-5p 1 0 0
chr11:118534933|118535192 hsa-miR-423-5p 1 0 0
chr11:118534933|118535192 hsa-miR-3191-3p 1 0 0
chr11:118534933|118535192 hsa-miR-3944-5p 1 0 0
chr11:118534933|118535192 hsa-miR-483-5p 1 0 0
chr11:118534933|118535192 hsa-miR-3144-5p 1 0 0
chr11:118534933|118535192 hsa-miR-1207-5p 1 0 0
chr11:118534933|118535192 hsa-miR-4763-3p 1 0 0
chr11:118534933|118535192 hsa-miR-6743-5p 1 0 0
chr11:118534933|118535192 hsa-miR-1249-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6763-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6797-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6808-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6879-5p 1 0 0
chr11:118534933|118535192 hsa-miR-3620-5p 1 0 0
chr11:118534933|118535192 hsa-miR-4728-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6780b-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6836-5p 1 0 0
chr11:118534933|118535192 hsa-miR-328-5p 1 0 0
chr11:118534933|118535192 hsa-miR-4632-5p 1 0 0
chr11:118534933|118535192 hsa-miR-4725-3p 1 0 0
chr11:118534933|118535192 hsa-miR-4726-5p 1 0 0
chr11:118534933|118535192 hsa-miR-4749-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6735-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6846-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6848-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6831-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6845-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6885-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6511a-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6758-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6856-5p 1 0 0
chr11:118534933|118535192 hsa-miR-3173-3p 1 0 0
chr11:118534933|118535192 hsa-miR-6785-5p 1 0 0
chr11:118534933|118535192 hsa-miR-550a-3-5p 1 0 0
chr11:118534933|118535192 hsa-miR-550a-5p 1 0 0
chr11:118534933|118535192 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:118534933|118535192
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MHRNQPLTQRYRPSTNVLFAAHVSALHFFSSVP
Nucleotide Sequence TTGCACAGAAACCAACCCCTGACCCAGCGGTACCGGCCAAGCACAAACGTCCTTTTTGCTGCACACGTCTCTGCCCTTCACTTCTTCTCTTCTGTCCCC
CircID chr11:118534933|118535192
ORF Type ORF2
Protein Length 53
Nucleotide Length 162
Protein Sequence MYSRHGGVPVWGTGRALHGFSSFLCYVALFPQVKFRTLLAVQNPIALCTETNP
Nucleotide Sequence TTGTACAGTAGGCATGGGGGCGTGCCTGTGTGGGGGACAGGGAGGGCCCTGCATGGATTTTCCTCCTTCCTATGCTATGTAGCCTTGTTCCCTCAGGTAAAATTTAGGACCCTGCTAGCTGTGCAGAACCCAATTGCCCTTTGCACAGAAACCAACCCCTGA
CircID chr11:118534933|118535192
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MCRTQLPFAQKPTPDPAVPAKHKRPFCCTRLCPSLLLFCPH
Nucleotide Sequence CTGTGCAGAACCCAATTGCCCTTTGCACAGAAACCAACCCCTGACCCAGCGGTACCGGCCAAGCACAAACGTCCTTTTTGCTGCACACGTCTCTGCCCTTCACTTCTTCTCTTCTGTCCCCAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab