CircRNA Information

General Information
circRNA Basic Information
CircID chr11:118897976|118898132
Strand +
CircType exon
Host Gene ENSG00000186174.11;
Algorism CIRI2;
Sequence CTCTTTCCGTGCATCCCTGCACCCGCCACACCCCCTTCAGCTATGCTTTTGGAGTCCTGGATGGGAATCTGGGGGGAGAGAGGAAGGACAGGTCAGGTCTCCCCCAGCCCCTTCTGCTCCTGTCTCCTCGTGTCCGCATTGCTGGAGCTCCACCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:118897976|118898132 hsa-miR-625-5p 0 0 1
chr11:118897976|118898132 hsa-miR-625-3p 0 0 1
chr11:118897976|118898132 hsa-miR-631 0 0 1
chr11:118897976|118898132 hsa-miR-637 0 1 1
chr11:118897976|118898132 hsa-miR-766-5p 0 0 1
chr11:118897976|118898132 hsa-miR-766-3p 0 0 1
chr11:118897976|118898132 hsa-miR-298 1 0 1
chr11:118897976|118898132 hsa-miR-665 0 0 1
chr11:118897976|118898132 hsa-miR-1275 0 1 1
chr11:118897976|118898132 hsa-miR-769-5p 0 0 1
chr11:118897976|118898132 hsa-miR-361-3p 0 1 1
chr11:118897976|118898132 hsa-miR-338-3p 0 0 1
chr11:118897976|118898132 hsa-miR-151-5p 0 0 1
chr11:118897976|118898132 hsa-miR-644 0 0 1
chr11:118897976|118898132 hsa-miR-886-3p 0 0 1
chr11:118897976|118898132 hsa-miR-663 0 0 1
chr11:118897976|118898132 hsa-miR-762 1 1 0
chr11:118897976|118898132 hsa-miR-1268a 1 0 0
chr11:118897976|118898132 hsa-miR-3138 1 0 0
chr11:118897976|118898132 hsa-miR-3154 1 1 0
chr11:118897976|118898132 hsa-miR-3621 1 0 0
chr11:118897976|118898132 hsa-miR-1268b 1 0 0
chr11:118897976|118898132 hsa-miR-4428 0 1 0
chr11:118897976|118898132 hsa-miR-4468 0 1 0
chr11:118897976|118898132 hsa-miR-4516 1 0 0
chr11:118897976|118898132 hsa-miR-4530 1 0 0
chr11:118897976|118898132 hsa-miR-4656 1 0 0
chr11:118897976|118898132 hsa-miR-4688 1 0 0
chr11:118897976|118898132 hsa-miR-4689 1 1 0
chr11:118897976|118898132 hsa-miR-4721 1 0 0
chr11:118897976|118898132 hsa-miR-4754 0 1 0
chr11:118897976|118898132 hsa-miR-6085 1 1 0
chr11:118897976|118898132 hsa-miR-6165 1 0 0
chr11:118897976|118898132 hsa-miR-12115 1 0 0
chr11:118897976|118898132 hsa-miR-12128 0 1 0
chr11:118897976|118898132 hsa-miR-4731-5p 0 1 0
chr11:118897976|118898132 hsa-miR-6840-3p 1 0 0
chr11:118897976|118898132 hsa-miR-6747-5p 1 1 0
chr11:118897976|118898132 hsa-miR-4726-3p 0 1 0
chr11:118897976|118898132 hsa-miR-4433a-3p 1 0 0
chr11:118897976|118898132 hsa-miR-6881-3p 0 1 0
chr11:118897976|118898132 hsa-miR-10b-3p 0 1 0
chr11:118897976|118898132 hsa-miR-6089 1 0 0
chr11:118897976|118898132 hsa-miR-6757-5p 0 1 0
chr11:118897976|118898132 hsa-miR-4722-5p 1 0 0
chr11:118897976|118898132 hsa-miR-7110-3p 0 1 0
chr11:118897976|118898132 hsa-miR-3180-3p 1 0 0
chr11:118897976|118898132 hsa-miR-185-3p 1 0 0
chr11:118897976|118898132 hsa-miR-6732-5p 1 1 0
chr11:118897976|118898132 hsa-miR-6782-5p 0 1 0
chr11:118897976|118898132 hsa-miR-6735-3p 0 1 0
chr11:118897976|118898132 hsa-miR-6786-5p 1 0 0
chr11:118897976|118898132 hsa-miR-6753-5p 1 0 0
chr11:118897976|118898132 hsa-miR-296-3p 1 0 0
chr11:118897976|118898132 hsa-miR-3667-3p 0 1 0
chr11:118897976|118898132 hsa-miR-4690-5p 1 0 0
chr11:118897976|118898132 hsa-miR-7111-3p 0 1 0
chr11:118897976|118898132 hsa-miR-6830-3p 0 1 0
chr11:118897976|118898132 hsa-miR-4787-5p 1 0 0
chr11:118897976|118898132 hsa-miR-4732-3p 1 1 0
chr11:118897976|118898132 hsa-miR-483-5p 0 1 0
chr11:118897976|118898132 hsa-miR-3124-3p 0 1 0
chr11:118897976|118898132 hsa-miR-6748-3p 0 1 0
chr11:118897976|118898132 hsa-miR-4763-3p 1 0 0
chr11:118897976|118898132 hsa-miR-6769b-5p 1 0 0
chr11:118897976|118898132 hsa-miR-6787-5p 1 0 0
chr11:118897976|118898132 hsa-miR-6816-5p 1 0 0
chr11:118897976|118898132 hsa-miR-6743-5p 1 0 0
chr11:118897976|118898132 hsa-miR-6752-5p 1 1 0
chr11:118897976|118898132 hsa-miR-6756-5p 1 0 0
chr11:118897976|118898132 hsa-miR-6803-5p 1 0 0
chr11:118897976|118898132 hsa-miR-6813-5p 1 1 0
chr11:118897976|118898132 hsa-miR-6842-5p 0 1 0
chr11:118897976|118898132 hsa-miR-7110-5p 1 1 0
chr11:118897976|118898132 hsa-miR-6751-5p 1 1 0
chr11:118897976|118898132 hsa-miR-1915-3p 1 0 0
chr11:118897976|118898132 hsa-miR-3620-5p 1 0 0
chr11:118897976|118898132 hsa-miR-5196-5p 1 0 0
chr11:118897976|118898132 hsa-miR-10396b-5p 1 0 0
chr11:118897976|118898132 hsa-miR-10526-3p 1 0 0
chr11:118897976|118898132 hsa-miR-4685-5p 1 0 0
chr11:118897976|118898132 hsa-miR-6777-5p 1 0 0
chr11:118897976|118898132 hsa-miR-6846-5p 1 0 0
chr11:118897976|118898132 hsa-miR-6848-5p 1 1 0
chr11:118897976|118898132 hsa-miR-6858-5p 1 0 0
chr11:118897976|118898132 hsa-miR-4723-5p 0 1 0
chr11:118897976|118898132 hsa-miR-3940-5p 1 0 0
chr11:118897976|118898132 hsa-miR-4665-5p 0 1 0
chr11:118897976|118898132 hsa-miR-6891-5p 1 0 0
chr11:118897976|118898132 hsa-miR-3689d 0 1 0
chr11:118897976|118898132 hsa-miR-7107-3p 0 1 0
chr11:118897976|118898132 hsa-miR-10400-3p 1 0 0
chr11:118897976|118898132 hsa-miR-3059-5p 0 1 0
chr11:118897976|118898132 hsa-miR-4723-3p 0 1 0
chr11:118897976|118898132 hsa-miR-6769b-3p 0 1 0
chr11:118897976|118898132 hsa-miR-5699-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:118897976|118898132
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MLLESWMGIWGERGRTGQVSPSPFCSCLLVSALLELHL
Nucleotide Sequence ATGCTTTTGGAGTCCTGGATGGGAATCTGGGGGGAGAGAGGAAGGACAGGTCAGGTCTCCCCCAGCCCCTTCTGCTCCTGTCTCCTCGTGTCCGCATTGCTGGAGCTCCACCTC
CircID chr11:118897976|118898132
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MHPPHPLQLCFWSPGWESGGREEGQVRSPPAPSAPVSSCPHCWSSTS
Nucleotide Sequence CTGCACCCGCCACACCCCCTTCAGCTATGCTTTTGGAGTCCTGGATGGGAATCTGGGGGGAGAGAGGAAGGACAGGTCAGGTCTCCCCCAGCCCCTTCTGCTCCTGTCTCCTCGTGTCCGCATTGCTGGAGCTCCACCTCC
CircID chr11:118897976|118898132
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MDGNLGGERKDRSGLPQPLLLLSPRVRIAGAPP
Nucleotide Sequence CTGGATGGGAATCTGGGGGGAGAGAGGAAGGACAGGTCAGGTCTCCCCCAGCCCCTTCTGCTCCTGTCTCCTCGTGTCCGCATTGCTGGAGCTCCACCT
CircID chr11:118897976|118898132
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MRTRGDRSRRGWGRPDLSFLSPPRFPSRTPKA
Nucleotide Sequence ATGCGGACACGAGGAGACAGGAGCAGAAGGGGCTGGGGGAGACCTGACCTGTCCTTCCTCTCTCCCCCCAGATTCCCATCCAGGACTCCAAAAGCATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab