CircRNA Information

General Information
circRNA Basic Information
CircID chr11:119048351|119048739
Strand -
CircType exon
Host Gene ENSG00000149428.17;
Algorism CIRI2;
Sequence TCGGGCTGGTACAGCTTGTCCTGGGTCTCAAATATGAATGCTTCCAAGCTGTTGGCAGCTTTTTCCCGTTCCTGCTTCTCCAGGTCTCGGAGTGTCAAGTCCTGAAGTCTATGGGACAAAGGAGGGGTAGGGATGAGGGAGAGGGCAAGTGAGAACTTGAGACTCTGGGTCCGACAGCCCTCCCTCCCAGGGCGCCATCCCACATCCTGCCCACCTTGCACACACATGTACACACACACACCAGCTGTCCTCACTTACTTCTGCACCGACTGAGCCAGCTTATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:119048351|119048739 hsa-miR-19a-5p 0 0 1
chr11:119048351|119048739 hsa-miR-19a-3p 0 0 1
chr11:119048351|119048739 hsa-miR-22-5p 0 0 1
chr11:119048351|119048739 hsa-miR-22-3p 0 0 1
chr11:119048351|119048739 hsa-miR-149-5p 0 0 1
chr11:119048351|119048739 hsa-miR-149-3p 0 0 1
chr11:119048351|119048739 hsa-miR-320a-5p 0 0 1
chr11:119048351|119048739 hsa-miR-320a-3p 0 0 1
chr11:119048351|119048739 hsa-miR-619-5p 0 0 1
chr11:119048351|119048739 hsa-miR-619-3p 0 0 1
chr11:119048351|119048739 hsa-miR-631 0 0 1
chr11:119048351|119048739 hsa-miR-634 0 0 1
chr11:119048351|119048739 hsa-miR-652-5p 0 0 1
chr11:119048351|119048739 hsa-miR-652-3p 0 0 1
chr11:119048351|119048739 hsa-miR-298 0 1 1
chr11:119048351|119048739 hsa-miR-874-5p 0 0 1
chr11:119048351|119048739 hsa-miR-874-3p 0 0 1
chr11:119048351|119048739 hsa-miR-541-5p 0 0 1
chr11:119048351|119048739 hsa-miR-541-3p 0 0 1
chr11:119048351|119048739 hsa-miR-873-5p 0 0 1
chr11:119048351|119048739 hsa-miR-873-3p 0 0 1
chr11:119048351|119048739 hsa-miR-1179 0 0 1
chr11:119048351|119048739 hsa-miR-1229-5p 0 0 1
chr11:119048351|119048739 hsa-miR-1229-3p 0 0 1
chr11:119048351|119048739 hsa-miR-1250-5p 0 0 1
chr11:119048351|119048739 hsa-miR-1250-3p 0 0 1
chr11:119048351|119048739 hsa-miR-1265 0 1 1
chr11:119048351|119048739 hsa-miR-1279 0 0 1
chr11:119048351|119048739 hsa-miR-513c-5p 0 0 1
chr11:119048351|119048739 hsa-miR-513c-3p 0 0 1
chr11:119048351|119048739 hsa-miR-1321 0 0 1
chr11:119048351|119048739 hsa-miR-671-5p 1 0 1
chr11:119048351|119048739 hsa-miR-769-5p 0 0 1
chr11:119048351|119048739 hsa-miR-1224-5p 0 0 1
chr11:119048351|119048739 hsa-miR-299-3p 0 1 1
chr11:119048351|119048739 hsa-miR-654-5p 0 0 1
chr11:119048351|119048739 hsa-miR-566 0 0 1
chr11:119048351|119048739 hsa-miR-1207-3p 0 0 1
chr11:119048351|119048739 hsa-miR-320b 0 0 1
chr11:119048351|119048739 hsa-miR-320c 0 0 1
chr11:119048351|119048739 hsa-miR-320d 0 0 1
chr11:119048351|119048739 hsa-miR-138 0 0 1
chr11:119048351|119048739 hsa-miR-19b 0 0 1
chr11:119048351|119048739 hsa-miR-514 0 0 1
chr11:119048351|119048739 hsa-miR-24 0 0 1
chr11:119048351|119048739 hsa-miR-648 1 0 0
chr11:119048351|119048739 hsa-miR-650 1 0 0
chr11:119048351|119048739 hsa-miR-762 1 0 0
chr11:119048351|119048739 hsa-miR-765 0 1 0
chr11:119048351|119048739 hsa-miR-297 1 0 0
chr11:119048351|119048739 hsa-miR-711 0 1 0
chr11:119048351|119048739 hsa-miR-4316 1 0 0
chr11:119048351|119048739 hsa-miR-4436a 0 1 0
chr11:119048351|119048739 hsa-miR-4455 1 0 0
chr11:119048351|119048739 hsa-miR-4487 1 0 0
chr11:119048351|119048739 hsa-miR-4510 0 1 0
chr11:119048351|119048739 hsa-miR-4656 1 0 0
chr11:119048351|119048739 hsa-miR-4681 0 1 0
chr11:119048351|119048739 hsa-miR-4683 1 0 0
chr11:119048351|119048739 hsa-miR-4689 1 0 0
chr11:119048351|119048739 hsa-miR-4710 1 1 0
chr11:119048351|119048739 hsa-miR-4741 1 1 0
chr11:119048351|119048739 hsa-miR-5090 1 0 0
chr11:119048351|119048739 hsa-miR-5703 0 1 0
chr11:119048351|119048739 hsa-miR-6072 0 1 0
chr11:119048351|119048739 hsa-miR-6079 1 0 0
chr11:119048351|119048739 hsa-miR-6127 0 1 0
chr11:119048351|119048739 hsa-miR-6133 0 1 0
chr11:119048351|119048739 hsa-miR-6134 0 1 0
chr11:119048351|119048739 hsa-miR-6165 1 0 0
chr11:119048351|119048739 hsa-miR-8083 0 1 0
chr11:119048351|119048739 hsa-miR-8089 1 0 0
chr11:119048351|119048739 hsa-miR-10226 1 1 0
chr11:119048351|119048739 hsa-miR-138-5p 0 1 0
chr11:119048351|119048739 hsa-miR-6840-3p 0 1 0
chr11:119048351|119048739 hsa-miR-4433a-3p 1 0 0
chr11:119048351|119048739 hsa-miR-4687-3p 1 0 0
chr11:119048351|119048739 hsa-miR-6892-3p 0 1 0
chr11:119048351|119048739 hsa-miR-6728-5p 0 1 0
chr11:119048351|119048739 hsa-miR-6089 1 0 0
chr11:119048351|119048739 hsa-miR-3192-5p 0 1 0
chr11:119048351|119048739 hsa-miR-4695-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6867-5p 1 1 0
chr11:119048351|119048739 hsa-miR-24-3p 1 1 0
chr11:119048351|119048739 hsa-miR-6727-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6873-3p 0 1 0
chr11:119048351|119048739 hsa-miR-7110-3p 0 1 0
chr11:119048351|119048739 hsa-miR-6772-5p 1 0 0
chr11:119048351|119048739 hsa-miR-3934-3p 1 0 0
chr11:119048351|119048739 hsa-miR-1226-5p 1 1 0
chr11:119048351|119048739 hsa-miR-4764-5p 0 1 0
chr11:119048351|119048739 hsa-miR-3127-5p 1 0 0
chr11:119048351|119048739 hsa-miR-5580-5p 0 1 0
chr11:119048351|119048739 hsa-miR-4667-3p 0 1 0
chr11:119048351|119048739 hsa-miR-4715-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6878-5p 0 1 0
chr11:119048351|119048739 hsa-miR-574-5p 1 1 0
chr11:119048351|119048739 hsa-miR-6870-3p 0 1 0
chr11:119048351|119048739 hsa-miR-7106-3p 0 1 0
chr11:119048351|119048739 hsa-miR-6867-3p 0 1 0
chr11:119048351|119048739 hsa-miR-6887-3p 0 1 0
chr11:119048351|119048739 hsa-miR-5000-3p 0 1 0
chr11:119048351|119048739 hsa-miR-4750-3p 1 0 0
chr11:119048351|119048739 hsa-miR-3177-5p 1 1 0
chr11:119048351|119048739 hsa-miR-6846-3p 0 1 0
chr11:119048351|119048739 hsa-miR-3162-3p 0 1 0
chr11:119048351|119048739 hsa-miR-1273h-5p 0 1 0
chr11:119048351|119048739 hsa-miR-4763-3p 1 0 0
chr11:119048351|119048739 hsa-miR-6769b-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6737-5p 0 1 0
chr11:119048351|119048739 hsa-miR-6752-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6756-5p 1 1 0
chr11:119048351|119048739 hsa-miR-6769a-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6813-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6819-5p 1 0 0
chr11:119048351|119048739 hsa-miR-7107-5p 0 1 0
chr11:119048351|119048739 hsa-miR-1249-5p 1 1 0
chr11:119048351|119048739 hsa-miR-6779-5p 0 1 0
chr11:119048351|119048739 hsa-miR-6780a-5p 0 1 0
chr11:119048351|119048739 hsa-miR-6797-5p 0 1 0
chr11:119048351|119048739 hsa-miR-6808-5p 0 1 0
chr11:119048351|119048739 hsa-miR-6879-5p 1 0 0
chr11:119048351|119048739 hsa-miR-328-5p 1 0 0
chr11:119048351|119048739 hsa-miR-4632-5p 1 1 0
chr11:119048351|119048739 hsa-miR-4649-5p 1 0 0
chr11:119048351|119048739 hsa-miR-675-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6858-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6883-5p 0 1 0
chr11:119048351|119048739 hsa-miR-4769-5p 0 1 0
chr11:119048351|119048739 hsa-miR-3085-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6856-5p 1 0 0
chr11:119048351|119048739 hsa-miR-3679-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6785-5p 0 1 0
chr11:119048351|119048739 hsa-miR-4667-5p 0 1 0
chr11:119048351|119048739 hsa-miR-6790-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6791-5p 1 1 0
chr11:119048351|119048739 hsa-miR-9851-5p 1 0 0
chr11:119048351|119048739 hsa-miR-6891-3p 0 1 0
chr11:119048351|119048739 hsa-miR-7114-3p 1 0 0
chr11:119048351|119048739 hsa-miR-7157-5p 1 0 0
chr11:119048351|119048739 hsa-miR-514b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:119048351|119048739
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MSWVSNMNASKLLAAFSRSCFSRSRSVKS
Nucleotide Sequence TTGTCCTGGGTCTCAAATATGAATGCTTCCAAGCTGTTGGCAGCTTTTTCCCGTTCCTGCTTCTCCAGGTCTCGGAGTGTCAAGTCCTGA
CircID chr11:119048351|119048739
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MRERASENLRLWVRQPSLPGRHPTSCPPCTHMYTHTPAVLTYFCTD
Nucleotide Sequence ATGAGGGAGAGGGCAAGTGAGAACTTGAGACTCTGGGTCCGACAGCCCTCCCTCCCAGGGCGCCATCCCACATCCTGCCCACCTTGCACACACATGTACACACACACACCAGCTGTCCTCACTTACTTCTGCACCGACTGA
CircID chr11:119048351|119048739
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MLPSCWQLFPVPASPGLGVSSPEVYGTKEG
Nucleotide Sequence ATGCTTCCAAGCTGTTGGCAGCTTTTTCCCGTTCCTGCTTCTCCAGGTCTCGGAGTGTCAAGTCCTGAAGTCTATGGGACAAAGGAGGGGTAG
CircID chr11:119048351|119048739
ORF Type ORF4
Protein Length 48
Nucleotide Length 147
Protein Sequence MVQLVLGLKYECFQAVGSFFPFLLLQVSECQVLKSMGQRRGRDEGEGK
Nucleotide Sequence CTGGTACAGCTTGTCCTGGGTCTCAAATATGAATGCTTCCAAGCTGTTGGCAGCTTTTTCCCGTTCCTGCTTCTCCAGGTCTCGGAGTGTCAAGTCCTGAAGTCTATGGGACAAAGGAGGGGTAGGGATGAGGGAGAGGGCAAGTGA
CircID chr11:119048351|119048739
ORF Type ORF5
Protein Length 40
Nucleotide Length 120
Protein Sequence MGPTALPPRAPSHILPTLHTHVHTHTSCPHLLLHRLSQLI
Nucleotide Sequence CTGGGTCCGACAGCCCTCCCTCCCAGGGCGCCATCCCACATCCTGCCCACCTTGCACACACATGTACACACACACACCAGCTGTCCTCACTTACTTCTGCACCGACTGAGCCAGCTTATC
CircID chr11:119048351|119048739
ORF Type ORF6
Protein Length 75
Nucleotide Length 225
Protein Sequence MCVQGGQDVGWRPGREGCRTQSLKFSLALSLIPTPPLSHRLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQP
Nucleotide Sequence ATGTGTGTGCAAGGTGGGCAGGATGTGGGATGGCGCCCTGGGAGGGAGGGCTGTCGGACCCAGAGTCTCAAGTTCTCACTTGCCCTCTCCCTCATCCCTACCCCTCCTTTGTCCCATAGACTTCAGGACTTGACACTCCGAGACCTGGAGAAGCAGGAACGGGAAAAAGCTGCCAACAGCTTGGAAGCATTCATATTTGAGACCCAGGACAAGCTGTACCAGCCC
CircID chr11:119048351|119048739
ORF Type ORF7
Protein Length 49
Nucleotide Length 150
Protein Sequence MVCVCTCVCKVGRMWDGALGGRAVGPRVSSSHLPSPSSLPLLCPIDFRT
Nucleotide Sequence CTGGTGTGTGTGTGTACATGTGTGTGCAAGGTGGGCAGGATGTGGGATGGCGCCCTGGGAGGGAGGGCTGTCGGACCCAGAGTCTCAAGTTCTCACTTGCCCTCTCCCTCATCCCTACCCCTCCTTTGTCCCATAGACTTCAGGACTTGA
CircID chr11:119048351|119048739
ORF Type ORF8
Protein Length 29
Nucleotide Length 90
Protein Sequence MAPWEGGLSDPESQVLTCPLPHPYPSFVP
Nucleotide Sequence ATGGCGCCCTGGGAGGGAGGGCTGTCGGACCCAGAGTCTCAAGTTCTCACTTGCCCTCTCCCTCATCCCTACCCCTCCTTTGTCCCATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab