CircRNA Information

General Information
circRNA Basic Information
CircID chr11:119055262|119055553
Strand +
CircType exon
Host Gene ENSG00000149428.17;
Algorism CIRI2;
Sequence ACCGGTGATCGTGACCCTGAAAGAAAATGAAAGATTCTTTGGAGACAGTGCAGCAAGCATGGTGAGCTAGCAGTCCCTCTTCCCAGAGTGGTGGGCAGAGGAGAGGAGATGGCAGCCCCCAGAGTCTGTTTCCTTATCAGTCTCTGTGATGTAAGAGGTAGGTAATGGTGGACTTGGGAGCCTAATACTAGTCTGCTCCTTCTTCACCCCTCAGGCGATTAAGAATCCAAAGGCTACGCTACGTTACTTCCAGCACCTCCTGGGGAAGCAGGCAGATAACCCCCATGTAGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:119055262|119055553 hsa-miR-221-5p 0 0 1
chr11:119055262|119055553 hsa-miR-221-3p 0 0 1
chr11:119055262|119055553 hsa-miR-222-5p 0 0 1
chr11:119055262|119055553 hsa-miR-222-3p 0 0 1
chr11:119055262|119055553 hsa-miR-150-5p 0 0 1
chr11:119055262|119055553 hsa-miR-150-3p 0 0 1
chr11:119055262|119055553 hsa-miR-186-5p 0 0 1
chr11:119055262|119055553 hsa-miR-186-3p 0 0 1
chr11:119055262|119055553 hsa-miR-326 0 0 1
chr11:119055262|119055553 hsa-miR-579-5p 0 0 1
chr11:119055262|119055553 hsa-miR-579-3p 0 0 1
chr11:119055262|119055553 hsa-miR-600 0 0 1
chr11:119055262|119055553 hsa-miR-621 0 0 1
chr11:119055262|119055553 hsa-miR-637 0 0 1
chr11:119055262|119055553 hsa-miR-665 0 0 1
chr11:119055262|119055553 hsa-miR-1287-5p 0 0 1
chr11:119055262|119055553 hsa-miR-1287-3p 0 0 1
chr11:119055262|119055553 hsa-miR-1288-5p 0 0 1
chr11:119055262|119055553 hsa-miR-1288-3p 0 0 1
chr11:119055262|119055553 hsa-miR-423-5p 1 0 1
chr11:119055262|119055553 hsa-miR-885-5p 0 0 1
chr11:119055262|119055553 hsa-miR-324-3p 1 0 1
chr11:119055262|119055553 hsa-miR-330-5p 0 0 1
chr11:119055262|119055553 hsa-miR-515-5p 0 0 1
chr11:119055262|119055553 hsa-miR-516a-3p 0 0 1
chr11:119055262|119055553 hsa-miR-499-3p 0 0 1
chr11:119055262|119055553 hsa-miR-608 1 0 0
chr11:119055262|119055553 hsa-miR-3132 1 0 0
chr11:119055262|119055553 hsa-miR-3137 1 0 0
chr11:119055262|119055553 hsa-miR-4479 1 0 0
chr11:119055262|119055553 hsa-miR-4651 1 0 0
chr11:119055262|119055553 hsa-miR-4741 1 0 0
chr11:119055262|119055553 hsa-miR-5090 1 0 0
chr11:119055262|119055553 hsa-miR-6734-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6747-5p 1 0 0
chr11:119055262|119055553 hsa-miR-3192-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6880-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6741-5p 1 0 0
chr11:119055262|119055553 hsa-miR-197-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6845-3p 1 0 0
chr11:119055262|119055553 hsa-miR-6793-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6732-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6798-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6782-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6882-3p 1 0 0
chr11:119055262|119055553 hsa-miR-4787-5p 1 0 0
chr11:119055262|119055553 hsa-miR-1250-5p 1 0 0
chr11:119055262|119055553 hsa-miR-508-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6738-3p 1 0 0
chr11:119055262|119055553 hsa-miR-4727-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6769b-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6812-5p 1 0 0
chr11:119055262|119055553 hsa-miR-5001-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6752-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6803-5p 1 0 0
chr11:119055262|119055553 hsa-miR-7110-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6751-5p 1 0 0
chr11:119055262|119055553 hsa-miR-7111-5p 1 0 0
chr11:119055262|119055553 hsa-miR-4649-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6738-5p 1 0 0
chr11:119055262|119055553 hsa-miR-6846-5p 1 0 0
chr11:119055262|119055553 hsa-miR-4646-5p 1 0 0
chr11:119055262|119055553 hsa-miR-550a-3-5p 1 0 0
chr11:119055262|119055553 hsa-miR-550a-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:119055262|119055553
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MPSPLLCPPLWEEGLLAHHACCTVSKESFIFFQGHDHR
Nucleotide Sequence CTGCCATCTCCTCTCCTCTGCCCACCACTCTGGGAAGAGGGACTGCTAGCTCACCATGCTTGCTGCACTGTCTCCAAAGAATCTTTCATTTTCTTTCAGGGTCACGATCACCGG
CircID chr11:119055262|119055553
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MIRKQTLGAAISSPLPTTLGRGTASSPCLLHCLQRIFHFLSGSRSP
Nucleotide Sequence CTGATAAGGAAACAGACTCTGGGGGCTGCCATCTCCTCTCCTCTGCCCACCACTCTGGGAAGAGGGACTGCTAGCTCACCATGCTTGCTGCACTGTCTCCAAAGAATCTTTCATTTTCTTTCAGGGTCACGATCACCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab