CircRNA Information

General Information
circRNA Basic Information
CircID chr11:119055268|119055571
Strand -
CircType exon
Host Gene ENSG00000149428.17;
Algorism CIRI2;
Sequence ATGGGGGTTATCTGCCTGCTTCCCCAGGAGGTGCTGGAAGTAACGTAGCGTAGCCTTTGGATTCTTAATCGCCTGAGGGGTGAAGAAGGAGCAGACTAGTATTAGGCTCCCAAGTCCACCATTACCTACCTCTTACATCACAGAGACTGATAAGGAAACAGACTCTGGGGGCTGCCATCTCCTCTCCTCTGCCCACCACTCTGGGAAGAGGGACTGCTAGCTCACCATGCTTGCTGCACTGTCTCCAAAGAATCTTTCATTTTCTTTCAGGGTCACGATCACCGGTGTTTTCCTCCGAGATTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:119055268|119055571 hsa-let-7b-5p 0 0 1
chr11:119055268|119055571 hsa-let-7b-3p 0 0 1
chr11:119055268|119055571 hsa-let-7c-5p 0 0 1
chr11:119055268|119055571 hsa-let-7c-3p 0 0 1
chr11:119055268|119055571 hsa-let-7d-5p 0 0 1
chr11:119055268|119055571 hsa-let-7d-3p 0 0 1
chr11:119055268|119055571 hsa-let-7e-5p 0 0 1
chr11:119055268|119055571 hsa-let-7e-3p 0 0 1
chr11:119055268|119055571 hsa-miR-98-5p 0 0 1
chr11:119055268|119055571 hsa-miR-98-3p 0 0 1
chr11:119055268|119055571 hsa-miR-107 0 0 1
chr11:119055268|119055571 hsa-miR-148a-5p 0 0 1
chr11:119055268|119055571 hsa-miR-148a-3p 0 0 1
chr11:119055268|119055571 hsa-miR-200b-5p 0 0 1
chr11:119055268|119055571 hsa-miR-200b-3p 0 0 1
chr11:119055268|119055571 hsa-let-7g-5p 0 0 1
chr11:119055268|119055571 hsa-let-7g-3p 0 0 1
chr11:119055268|119055571 hsa-let-7i-5p 0 0 1
chr11:119055268|119055571 hsa-let-7i-3p 0 0 1
chr11:119055268|119055571 hsa-miR-152-5p 0 0 1
chr11:119055268|119055571 hsa-miR-152-3p 0 0 1
chr11:119055268|119055571 hsa-miR-200c-5p 0 0 1
chr11:119055268|119055571 hsa-miR-200c-3p 0 0 1
chr11:119055268|119055571 hsa-miR-148b-5p 0 0 1
chr11:119055268|119055571 hsa-miR-148b-3p 0 0 1
chr11:119055268|119055571 hsa-miR-429 0 0 1
chr11:119055268|119055571 hsa-miR-412-5p 0 0 1
chr11:119055268|119055571 hsa-miR-412-3p 0 0 1
chr11:119055268|119055571 hsa-miR-504-5p 0 0 1
chr11:119055268|119055571 hsa-miR-504-3p 0 0 1
chr11:119055268|119055571 hsa-miR-570-5p 0 0 1
chr11:119055268|119055571 hsa-miR-570-3p 0 0 1
chr11:119055268|119055571 hsa-miR-593-5p 0 0 1
chr11:119055268|119055571 hsa-miR-593-3p 0 0 1
chr11:119055268|119055571 hsa-miR-610 0 0 1
chr11:119055268|119055571 hsa-miR-620 0 0 1
chr11:119055268|119055571 hsa-miR-621 0 0 1
chr11:119055268|119055571 hsa-miR-622 0 0 1
chr11:119055268|119055571 hsa-miR-541-5p 0 0 1
chr11:119055268|119055571 hsa-miR-541-3p 0 0 1
chr11:119055268|119055571 hsa-miR-920 0 0 1
chr11:119055268|119055571 hsa-miR-1236-5p 0 0 1
chr11:119055268|119055571 hsa-miR-1236-3p 0 0 1
chr11:119055268|119055571 hsa-miR-1237-5p 0 0 1
chr11:119055268|119055571 hsa-miR-1237-3p 0 0 1
chr11:119055268|119055571 hsa-miR-1248 0 0 1
chr11:119055268|119055571 hsa-miR-1270 0 0 1
chr11:119055268|119055571 hsa-miR-885-3p 0 0 1
chr11:119055268|119055571 hsa-miR-361-5p 0 0 1
chr11:119055268|119055571 hsa-miR-654-5p 0 0 1
chr11:119055268|119055571 hsa-miR-361-3p 0 1 1
chr11:119055268|119055571 hsa-miR-767-3p 0 0 1
chr11:119055268|119055571 hsa-miR-338-3p 0 0 1
chr11:119055268|119055571 hsa-miR-642 0 0 1
chr11:119055268|119055571 hsa-miR-103 0 0 1
chr11:119055268|119055571 hsa-miR-9 0 0 1
chr11:119055268|119055571 hsa-let-7a 0 0 1
chr11:119055268|119055571 hsa-let-7f 0 0 1
chr11:119055268|119055571 hsa-miR-768-5p 0 0 1
chr11:119055268|119055571 hsa-miR-637 1 0 0
chr11:119055268|119055571 hsa-miR-658 0 1 0
chr11:119055268|119055571 hsa-miR-765 1 1 0
chr11:119055268|119055571 hsa-miR-1291 1 0 0
chr11:119055268|119055571 hsa-miR-1293 1 0 0
chr11:119055268|119055571 hsa-miR-2110 0 1 0
chr11:119055268|119055571 hsa-miR-3132 1 0 0
chr11:119055268|119055571 hsa-miR-3138 1 0 0
chr11:119055268|119055571 hsa-miR-3147 1 0 0
chr11:119055268|119055571 hsa-miR-4274 0 1 0
chr11:119055268|119055571 hsa-miR-3943 0 1 0
chr11:119055268|119055571 hsa-miR-378f 1 0 0
chr11:119055268|119055571 hsa-miR-4458 0 1 0
chr11:119055268|119055571 hsa-miR-4651 1 0 0
chr11:119055268|119055571 hsa-miR-4656 1 0 0
chr11:119055268|119055571 hsa-miR-4658 1 0 0
chr11:119055268|119055571 hsa-miR-4689 1 0 0
chr11:119055268|119055571 hsa-miR-4784 0 1 0
chr11:119055268|119055571 hsa-miR-8053 0 1 0
chr11:119055268|119055571 hsa-miR-8089 0 1 0
chr11:119055268|119055571 hsa-miR-12126 0 1 0
chr11:119055268|119055571 hsa-miR-12131 0 1 0
chr11:119055268|119055571 hsa-miR-6510-5p 1 0 0
chr11:119055268|119055571 hsa-miR-8071 1 1 0
chr11:119055268|119055571 hsa-miR-766-5p 0 1 0
chr11:119055268|119055571 hsa-miR-139-3p 1 0 0
chr11:119055268|119055571 hsa-miR-7114-5p 1 0 0
chr11:119055268|119055571 hsa-miR-6880-5p 1 0 0
chr11:119055268|119055571 hsa-miR-4695-5p 1 0 0
chr11:119055268|119055571 hsa-miR-197-5p 0 1 0
chr11:119055268|119055571 hsa-miR-3180-3p 1 0 0
chr11:119055268|119055571 hsa-miR-6827-5p 1 1 0
chr11:119055268|119055571 hsa-miR-2467-3p 0 1 0
chr11:119055268|119055571 hsa-miR-6888-5p 0 1 0
chr11:119055268|119055571 hsa-miR-6810-5p 1 1 0
chr11:119055268|119055571 hsa-miR-5008-5p 1 0 0
chr11:119055268|119055571 hsa-miR-345-3p 0 1 0
chr11:119055268|119055571 hsa-miR-6772-3p 0 1 0
chr11:119055268|119055571 hsa-miR-7109-5p 1 0 0
chr11:119055268|119055571 hsa-miR-1229-5p 1 0 0
chr11:119055268|119055571 hsa-miR-4690-5p 0 1 0
chr11:119055268|119055571 hsa-miR-877-5p 0 1 0
chr11:119055268|119055571 hsa-miR-6847-5p 0 1 0
chr11:119055268|119055571 hsa-miR-6828-5p 0 1 0
chr11:119055268|119055571 hsa-miR-887-5p 0 1 0
chr11:119055268|119055571 hsa-miR-2114-5p 0 1 0
chr11:119055268|119055571 hsa-miR-6828-3p 0 1 0
chr11:119055268|119055571 hsa-miR-3944-5p 0 1 0
chr11:119055268|119055571 hsa-miR-4778-3p 0 1 0
chr11:119055268|119055571 hsa-miR-519d-5p 1 0 0
chr11:119055268|119055571 hsa-miR-598-5p 0 1 0
chr11:119055268|119055571 hsa-miR-6802-3p 0 1 0
chr11:119055268|119055571 hsa-miR-642a-5p 0 1 0
chr11:119055268|119055571 hsa-miR-6769b-5p 1 1 0
chr11:119055268|119055571 hsa-miR-6726-5p 1 0 0
chr11:119055268|119055571 hsa-miR-6769a-5p 1 1 0
chr11:119055268|119055571 hsa-miR-6754-3p 0 1 0
chr11:119055268|119055571 hsa-miR-5189-5p 0 1 0
chr11:119055268|119055571 hsa-miR-6780b-5p 0 1 0
chr11:119055268|119055571 hsa-miR-328-5p 1 0 0
chr11:119055268|119055571 hsa-miR-449c-5p 1 0 0
chr11:119055268|119055571 hsa-miR-4649-5p 1 0 0
chr11:119055268|119055571 hsa-miR-4725-3p 0 1 0
chr11:119055268|119055571 hsa-miR-6735-5p 1 0 0
chr11:119055268|119055571 hsa-miR-939-5p 1 0 0
chr11:119055268|119055571 hsa-miR-6511a-5p 0 1 0
chr11:119055268|119055571 hsa-miR-4665-5p 1 0 0
chr11:119055268|119055571 hsa-miR-4700-5p 0 1 0
chr11:119055268|119055571 hsa-miR-4667-5p 0 1 0
chr11:119055268|119055571 hsa-miR-6791-5p 1 0 0
chr11:119055268|119055571 hsa-miR-7107-3p 0 1 0
chr11:119055268|119055571 hsa-miR-6805-3p 1 0 0
chr11:119055268|119055571 hsa-miR-6764-5p 0 1 0
chr11:119055268|119055571 hsa-miR-34c-5p 0 1 0
chr11:119055268|119055571 hsa-miR-7973 0 1 0
chr11:119055268|119055571 hsa-miR-374a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:119055268|119055571
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MPSPLLCPPLWEEGLLAHHACCTVSKESFIFFQGHDHRCFPPRF
Nucleotide Sequence CTGCCATCTCCTCTCCTCTGCCCACCACTCTGGGAAGAGGGACTGCTAGCTCACCATGCTTGCTGCACTGTCTCCAAAGAATCTTTCATTTTCTTTCAGGGTCACGATCACCGGTGTTTTCCTCCGAGATTC
CircID chr11:119055268|119055571
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MLAALSPKNLSFSFRVTITGVFLRDS
Nucleotide Sequence ATGCTTGCTGCACTGTCTCCAAAGAATCTTTCATTTTCTTTCAGGGTCACGATCACCGGTGTTTTCCTCCGAGATTCC
CircID chr11:119055268|119055571
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MIRKQTLGAAISSPLPTTLGRGTASSPCLLHCLQRIFHFLSGSRSPVFSSEI
Nucleotide Sequence CTGATAAGGAAACAGACTCTGGGGGCTGCCATCTCCTCTCCTCTGCCCACCACTCTGGGAAGAGGGACTGCTAGCTCACCATGCTTGCTGCACTGTCTCCAAAGAATCTTTCATTTTCTTTCAGGGTCACGATCACCGGTGTTTTCCTCCGAGATT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab