CircRNA Information

General Information
circRNA Basic Information
CircID chr11:119089714|119090053
Strand -
CircType exon
Host Gene ENSG00000256269.5;
Algorism CIRI2;
Sequence CTGCCCACTGTGCTTCCTCCTGGCTTCACCATCGGAGCCATCTGCAAGTAAGAGTCTTGCAAGTAAGGGGCTTGGGCAGGGGTAGGCATCATGTGAACCTTTGCCTTTCCCTTTGGGGCCTGACCCTCTGCTTCAGGGTTATCTCCTCTGCCCTGAGGAGTGTTGACTGGTGGCAGAAAACTCAAGAAATACCAGTGAGTTGGCAATCGAGAGAGAATAGAGGTGATCTGAACTTAAATCTCTTCCCTCATTCTGTGCCCTTCCCTCCTCCCCCAGGCGGGAAAACCCTCATGATGCTGTTGTCTTTCACCCAAAATTTGTTGGGAAGACCCTAGAAACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:119089714|119090053 hsa-miR-23a-5p 0 0 1
chr11:119089714|119090053 hsa-miR-23a-3p 0 0 1
chr11:119089714|119090053 hsa-miR-23b-5p 0 0 1
chr11:119089714|119090053 hsa-miR-23b-3p 0 0 1
chr11:119089714|119090053 hsa-miR-526b-5p 0 0 1
chr11:119089714|119090053 hsa-miR-526b-3p 0 0 1
chr11:119089714|119090053 hsa-miR-505-5p 0 0 1
chr11:119089714|119090053 hsa-miR-505-3p 0 0 1
chr11:119089714|119090053 hsa-miR-578 0 0 1
chr11:119089714|119090053 hsa-miR-625-5p 0 0 1
chr11:119089714|119090053 hsa-miR-625-3p 0 0 1
chr11:119089714|119090053 hsa-miR-637 0 0 1
chr11:119089714|119090053 hsa-miR-661 0 0 1
chr11:119089714|119090053 hsa-miR-765 0 0 1
chr11:119089714|119090053 hsa-miR-665 0 0 1
chr11:119089714|119090053 hsa-miR-1182 0 0 1
chr11:119089714|119090053 hsa-miR-1262 0 0 1
chr11:119089714|119090053 hsa-miR-1266-5p 0 0 1
chr11:119089714|119090053 hsa-miR-1266-3p 0 0 1
chr11:119089714|119090053 hsa-miR-1275 0 0 1
chr11:119089714|119090053 hsa-miR-1322 0 0 1
chr11:119089714|119090053 hsa-miR-193a-5p 0 0 1
chr11:119089714|119090053 hsa-miR-483-3p 0 0 1
chr11:119089714|119090053 hsa-miR-128 0 0 1
chr11:119089714|119090053 hsa-miR-544 0 0 1
chr11:119089714|119090053 hsa-miR-3945 1 0 0
chr11:119089714|119090053 hsa-miR-4739 1 0 0
chr11:119089714|119090053 hsa-miR-6133 1 0 0
chr11:119089714|119090053 hsa-miR-6745 1 0 0
chr11:119089714|119090053 hsa-miR-8089 1 0 0
chr11:119089714|119090053 hsa-miR-12115 1 0 0
chr11:119089714|119090053 hsa-miR-7106-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6894-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6833-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6880-5p 1 0 0
chr11:119089714|119090053 hsa-miR-1226-5p 1 0 0
chr11:119089714|119090053 hsa-miR-652-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6824-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6801-5p 1 0 0
chr11:119089714|119090053 hsa-miR-1207-5p 1 0 0
chr11:119089714|119090053 hsa-miR-1233-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6812-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6775-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6752-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6756-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6803-5p 1 0 0
chr11:119089714|119090053 hsa-miR-7107-5p 1 0 0
chr11:119089714|119090053 hsa-miR-1249-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6797-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6879-5p 1 0 0
chr11:119089714|119090053 hsa-miR-7111-5p 1 0 0
chr11:119089714|119090053 hsa-miR-4728-5p 1 0 0
chr11:119089714|119090053 hsa-miR-5196-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6780b-5p 1 0 0
chr11:119089714|119090053 hsa-miR-328-5p 1 0 0
chr11:119089714|119090053 hsa-miR-4649-5p 1 0 0
chr11:119089714|119090053 hsa-miR-4726-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6795-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6858-5p 1 0 0
chr11:119089714|119090053 hsa-miR-6736-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:119089714|119090053
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MCFLLASPSEPSASKSLASKGLGQG
Nucleotide Sequence CTGTGCTTCCTCCTGGCTTCACCATCGGAGCCATCTGCAAGTAAGAGTCTTGCAAGTAAGGGGCTTGGGCAGGGGTAG
CircID chr11:119089714|119090053
ORF Type ORF2
Protein Length 97
Nucleotide Length 294
Protein Sequence MQVRVLQVRGLGRGRHHVNLCLSLWGLTLCFRVISSALRSVDWWQKTQEIPVSWQSRENRGDLNLNLFPHSVPFPPPPGGKTLMMLLSFTQNLLGRP
Nucleotide Sequence CTGCAAGTAAGAGTCTTGCAAGTAAGGGGCTTGGGCAGGGGTAGGCATCATGTGAACCTTTGCCTTTCCCTTTGGGGCCTGACCCTCTGCTTCAGGGTTATCTCCTCTGCCCTGAGGAGTGTTGACTGGTGGCAGAAAACTCAAGAAATACCAGTGAGTTGGCAATCGAGAGAGAATAGAGGTGATCTGAACTTAAATCTCTTCCCTCATTCTGTGCCCTTCCCTCCTCCCCCAGGCGGGAAAACCCTCATGATGCTGTTGTCTTTCACCCAAAATTTGTTGGGAAGACCCTAG
CircID chr11:119089714|119090053
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MGEEGRAQNEGRDLSSDHLYSLSIANSLVFLEFSATSQHSSGQRR
Nucleotide Sequence CTGGGGGAGGAGGGAAGGGCACAGAATGAGGGAAGAGATTTAAGTTCAGATCACCTCTATTCTCTCTCGATTGCCAACTCACTGGTATTTCTTGAGTTTTCTGCCACCAGTCAACACTCCTCAGGGCAGAGGAGATAA
CircID chr11:119089714|119090053
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MGERQQHHEGFPAWGRREGHRMREEI
Nucleotide Sequence TTGGGTGAAAGACAACAGCATCATGAGGGTTTTCCCGCCTGGGGGAGGAGGGAAGGGCACAGAATGAGGGAAGAGATTTAA
CircID chr11:119089714|119090053
ORF Type ORF5
Protein Length 68
Nucleotide Length 204
Protein Sequence MPTHWYFLSFLPPVNTPQGRGDNPEAEGQAPKGKAKVHMMPTPAQAPYLQDSYLQMAPMVKPGGSTVG
Nucleotide Sequence TTGCCAACTCACTGGTATTTCTTGAGTTTTCTGCCACCAGTCAACACTCCTCAGGGCAGAGGAGATAACCCTGAAGCAGAGGGTCAGGCCCCAAAGGGAAAGGCAAAGGTTCACATGATGCCTACCCCTGCCCAAGCCCCTTACTTGCAAGACTCTTACTTGCAGATGGCTCCGATGGTGAAGCCAGGAGGAAGCACAGTGGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab