CircRNA Information

General Information
circRNA Basic Information
CircID chr11:119094280|119094417
Strand +
CircType exon
Host Gene ENSG00000188486.3;
Algorism CIRI2;
Sequence CCCCCCGGCGTGGTGCTTAGCCCAGGACTTTCAGACGCGGCCGCTGGCCGGGAGGCTTTGGTGGGAGAGACGCGATCGCCGATTTCGGTCTGGCGCCCCTTCTGCGGCCGGGACCCAGGCCTTTCACATCAGCTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:119094280|119094417 hsa-miR-29a-5p 0 0 1
chr11:119094280|119094417 hsa-miR-29a-3p 0 0 1
chr11:119094280|119094417 hsa-miR-150-5p 0 0 1
chr11:119094280|119094417 hsa-miR-150-3p 0 0 1
chr11:119094280|119094417 hsa-miR-29c-5p 0 0 1
chr11:119094280|119094417 hsa-miR-29c-3p 0 0 1
chr11:119094280|119094417 hsa-miR-488-5p 0 0 1
chr11:119094280|119094417 hsa-miR-488-3p 0 0 1
chr11:119094280|119094417 hsa-miR-661 1 1 1
chr11:119094280|119094417 hsa-miR-298 0 0 1
chr11:119094280|119094417 hsa-miR-532-3p 0 1 1
chr11:119094280|119094417 hsa-miR-1224-3p 0 0 1
chr11:119094280|119094417 hsa-miR-1260 0 0 1
chr11:119094280|119094417 hsa-miR-1280 0 0 1
chr11:119094280|119094417 hsa-miR-29b 0 0 1
chr11:119094280|119094417 hsa-miR-638 1 0 0
chr11:119094280|119094417 hsa-miR-663a 1 0 0
chr11:119094280|119094417 hsa-miR-3154 0 1 0
chr11:119094280|119094417 hsa-miR-1260b 0 1 0
chr11:119094280|119094417 hsa-miR-4322 1 0 0
chr11:119094280|119094417 hsa-miR-4281 1 1 0
chr11:119094280|119094417 hsa-miR-3937 1 0 0
chr11:119094280|119094417 hsa-miR-378g 0 1 0
chr11:119094280|119094417 hsa-miR-4449 0 1 0
chr11:119094280|119094417 hsa-miR-4467 1 0 0
chr11:119094280|119094417 hsa-miR-1587 1 0 0
chr11:119094280|119094417 hsa-miR-3960 1 0 0
chr11:119094280|119094417 hsa-miR-4656 1 0 0
chr11:119094280|119094417 hsa-miR-4674 1 0 0
chr11:119094280|119094417 hsa-miR-4767 1 0 0
chr11:119094280|119094417 hsa-miR-8075 1 1 0
chr11:119094280|119094417 hsa-miR-9899 1 0 0
chr11:119094280|119094417 hsa-miR-187-3p 1 0 0
chr11:119094280|119094417 hsa-miR-4665-3p 1 1 0
chr11:119094280|119094417 hsa-miR-6836-3p 1 0 0
chr11:119094280|119094417 hsa-miR-6861-5p 1 0 0
chr11:119094280|119094417 hsa-miR-219a-1-3p 1 0 0
chr11:119094280|119094417 hsa-miR-6089 1 0 0
chr11:119094280|119094417 hsa-miR-4722-5p 1 1 0
chr11:119094280|119094417 hsa-miR-4713-5p 1 1 0
chr11:119094280|119094417 hsa-miR-7109-3p 0 1 0
chr11:119094280|119094417 hsa-miR-1908-3p 1 1 0
chr11:119094280|119094417 hsa-miR-4640-5p 1 0 0
chr11:119094280|119094417 hsa-miR-3677-3p 1 0 0
chr11:119094280|119094417 hsa-miR-3648 1 0 0
chr11:119094280|119094417 hsa-miR-3160-3p 0 1 0
chr11:119094280|119094417 hsa-miR-6789-5p 1 0 0
chr11:119094280|119094417 hsa-miR-664b-5p 1 1 0
chr11:119094280|119094417 hsa-miR-4707-5p 0 1 0
chr11:119094280|119094417 hsa-miR-6854-3p 0 1 0
chr11:119094280|119094417 hsa-miR-6895-3p 0 1 0
chr11:119094280|119094417 hsa-miR-3179 0 1 0
chr11:119094280|119094417 hsa-miR-6850-3p 1 0 0
chr11:119094280|119094417 hsa-miR-10400-5p 1 0 0
chr11:119094280|119094417 hsa-miR-6726-5p 1 0 0
chr11:119094280|119094417 hsa-miR-7107-5p 1 0 0
chr11:119094280|119094417 hsa-miR-3620-5p 1 0 0
chr11:119094280|119094417 hsa-miR-1237-5p 1 0 0
chr11:119094280|119094417 hsa-miR-3184-5p 1 1 0
chr11:119094280|119094417 hsa-miR-10392-3p 1 0 0
chr11:119094280|119094417 hsa-miR-6783-3p 0 1 0
chr11:119094280|119094417 hsa-miR-10394-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:119094280|119094417
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MVGETRSPISVWRPFCGRDPGLSHQLS
Nucleotide Sequence TTGGTGGGAGAGACGCGATCGCCGATTTCGGTCTGGCGCCCCTTCTGCGGCCGGGACCCAGGCCTTTCACATCAGCTCTCC
CircID chr11:119094280|119094417
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MAGRLWWERRDRRFRSGAPSAAGTQAFHISS
Nucleotide Sequence CTGGCCGGGAGGCTTTGGTGGGAGAGACGCGATCGCCGATTTCGGTCTGGCGCCCCTTCTGCGGCCGGGACCCAGGCCTTTCACATCAGCTCT
CircID chr11:119094280|119094417
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MGPGRRRGARPKSAIASLPPKPPGQRPRLKVLG
Nucleotide Sequence CTGGGTCCCGGCCGCAGAAGGGGCGCCAGACCGAAATCGGCGATCGCGTCTCTCCCACCAAAGCCTCCCGGCCAGCGGCCGCGTCTGAAAGTCCTGGGCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab