CircRNA Information

General Information
circRNA Basic Information
CircID chr11:119096941|119097217
Strand +
CircType exon
Host Gene ENSG00000172269.15;
Algorism CIRI2;
Sequence CCTCATCAACTTGCTACTTAAAGTCCTTGGGCCCATACATGAGAGAAACCTCACATTGCTCCTGCTGCTGCTGCAGGTGAGGATGGGAATCGAGTTTATACCTCCGTGTCTCCCTTTCTGCGTGATTCTTACTCCAGTCCATTTCTCCTTGCAGATCCTGGGCAGTGCCATCACCTTCTCCATTCGATATCAGCTCGTTCGACTCTTCTATGATGTCTGAGTCCCTTGATCATTGTCCTTTACCTCACAGTCTCTAGGATTCCTGACTCAGGCTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:119096941|119097217 hsa-let-7b-5p 0 0 1
chr11:119096941|119097217 hsa-let-7b-3p 0 0 1
chr11:119096941|119097217 hsa-let-7c-5p 0 0 1
chr11:119096941|119097217 hsa-let-7c-3p 0 0 1
chr11:119096941|119097217 hsa-let-7d-5p 0 0 1
chr11:119096941|119097217 hsa-let-7d-3p 0 0 1
chr11:119096941|119097217 hsa-let-7e-5p 0 0 1
chr11:119096941|119097217 hsa-let-7e-3p 0 0 1
chr11:119096941|119097217 hsa-miR-15a-5p 0 0 1
chr11:119096941|119097217 hsa-miR-15a-3p 0 0 1
chr11:119096941|119097217 hsa-miR-98-5p 0 0 1
chr11:119096941|119097217 hsa-miR-98-3p 0 0 1
chr11:119096941|119097217 hsa-miR-107 0 0 1
chr11:119096941|119097217 hsa-miR-183-5p 0 0 1
chr11:119096941|119097217 hsa-miR-183-3p 0 0 1
chr11:119096941|119097217 hsa-miR-214-5p 0 0 1
chr11:119096941|119097217 hsa-miR-214-3p 0 0 1
chr11:119096941|119097217 hsa-let-7g-5p 0 0 1
chr11:119096941|119097217 hsa-let-7g-3p 0 0 1
chr11:119096941|119097217 hsa-let-7i-5p 0 0 1
chr11:119096941|119097217 hsa-let-7i-3p 0 0 1
chr11:119096941|119097217 hsa-miR-15b-5p 0 0 1
chr11:119096941|119097217 hsa-miR-15b-3p 0 0 1
chr11:119096941|119097217 hsa-miR-195-5p 0 0 1
chr11:119096941|119097217 hsa-miR-195-3p 0 0 1
chr11:119096941|119097217 hsa-miR-424-5p 0 0 1
chr11:119096941|119097217 hsa-miR-424-3p 0 0 1
chr11:119096941|119097217 hsa-miR-376b-5p 0 0 1
chr11:119096941|119097217 hsa-miR-376b-3p 0 0 1
chr11:119096941|119097217 hsa-miR-202-5p 0 0 1
chr11:119096941|119097217 hsa-miR-202-3p 0 0 1
chr11:119096941|119097217 hsa-miR-497-5p 0 0 1
chr11:119096941|119097217 hsa-miR-497-3p 0 0 1
chr11:119096941|119097217 hsa-miR-539-5p 0 0 1
chr11:119096941|119097217 hsa-miR-539-3p 0 0 1
chr11:119096941|119097217 hsa-miR-562 0 0 1
chr11:119096941|119097217 hsa-miR-873-5p 0 0 1
chr11:119096941|119097217 hsa-miR-873-3p 0 0 1
chr11:119096941|119097217 hsa-miR-1294 0 1 1
chr11:119096941|119097217 hsa-miR-1288-5p 0 0 1
chr11:119096941|119097217 hsa-miR-1288-3p 0 0 1
chr11:119096941|119097217 hsa-miR-1324 0 0 1
chr11:119096941|119097217 hsa-miR-296-5p 0 0 1
chr11:119096941|119097217 hsa-miR-1184 0 0 1
chr11:119096941|119097217 hsa-miR-103 0 0 1
chr11:119096941|119097217 hsa-miR-16 0 0 1
chr11:119096941|119097217 hsa-miR-1269 0 0 1
chr11:119096941|119097217 hsa-let-7a 0 0 1
chr11:119096941|119097217 hsa-let-7f 0 0 1
chr11:119096941|119097217 hsa-miR-376a 0 0 1
chr11:119096941|119097217 hsa-miR-761 0 1 0
chr11:119096941|119097217 hsa-miR-298 1 1 0
chr11:119096941|119097217 hsa-miR-1182 1 0 0
chr11:119096941|119097217 hsa-miR-3137 1 1 0
chr11:119096941|119097217 hsa-miR-3154 1 0 0
chr11:119096941|119097217 hsa-miR-378c 0 1 0
chr11:119096941|119097217 hsa-miR-4293 0 1 0
chr11:119096941|119097217 hsa-miR-3908 0 1 0
chr11:119096941|119097217 hsa-miR-4428 1 1 0
chr11:119096941|119097217 hsa-miR-4430 1 0 0
chr11:119096941|119097217 hsa-miR-4437 1 0 0
chr11:119096941|119097217 hsa-miR-4462 1 1 0
chr11:119096941|119097217 hsa-miR-4475 0 1 0
chr11:119096941|119097217 hsa-miR-3689e 1 0 0
chr11:119096941|119097217 hsa-miR-3689f 1 0 0
chr11:119096941|119097217 hsa-miR-4527 1 1 0
chr11:119096941|119097217 hsa-miR-4531 0 1 0
chr11:119096941|119097217 hsa-miR-378i 0 1 0
chr11:119096941|119097217 hsa-miR-4656 1 0 0
chr11:119096941|119097217 hsa-miR-4674 1 0 0
chr11:119096941|119097217 hsa-miR-4739 1 0 0
chr11:119096941|119097217 hsa-miR-5093 1 1 0
chr11:119096941|119097217 hsa-miR-5680 0 1 0
chr11:119096941|119097217 hsa-miR-5681a 0 1 0
chr11:119096941|119097217 hsa-miR-6081 1 0 0
chr11:119096941|119097217 hsa-miR-6085 1 0 0
chr11:119096941|119097217 hsa-miR-6165 0 1 0
chr11:119096941|119097217 hsa-miR-8052 1 1 0
chr11:119096941|119097217 hsa-miR-8075 1 0 0
chr11:119096941|119097217 hsa-miR-8080 0 1 0
chr11:119096941|119097217 hsa-miR-9986 0 1 0
chr11:119096941|119097217 hsa-miR-12115 1 0 0
chr11:119096941|119097217 hsa-miR-6840-3p 0 1 0
chr11:119096941|119097217 hsa-miR-6765-5p 1 0 0
chr11:119096941|119097217 hsa-miR-6510-5p 1 0 0
chr11:119096941|119097217 hsa-miR-766-5p 1 0 0
chr11:119096941|119097217 hsa-miR-139-3p 1 0 0
chr11:119096941|119097217 hsa-miR-4722-5p 0 1 0
chr11:119096941|119097217 hsa-miR-6742-5p 1 0 0
chr11:119096941|119097217 hsa-miR-503-5p 0 1 0
chr11:119096941|119097217 hsa-miR-6829-5p 1 0 0
chr11:119096941|119097217 hsa-miR-23a-5p 1 0 0
chr11:119096941|119097217 hsa-miR-6760-5p 1 1 0
chr11:119096941|119097217 hsa-miR-6881-5p 1 0 0
chr11:119096941|119097217 hsa-miR-5088-5p 1 0 0
chr11:119096941|119097217 hsa-miR-3944-3p 1 0 0
chr11:119096941|119097217 hsa-miR-4640-5p 1 0 0
chr11:119096941|119097217 hsa-miR-4713-3p 1 1 0
chr11:119096941|119097217 hsa-miR-4787-5p 1 0 0
chr11:119096941|119097217 hsa-miR-5196-3p 0 1 0
chr11:119096941|119097217 hsa-miR-4446-3p 1 0 0
chr11:119096941|119097217 hsa-miR-149-3p 1 0 0
chr11:119096941|119097217 hsa-miR-937-5p 1 1 0
chr11:119096941|119097217 hsa-miR-6781-5p 1 0 0
chr11:119096941|119097217 hsa-miR-6877-5p 1 0 0
chr11:119096941|119097217 hsa-miR-516b-5p 0 1 0
chr11:119096941|119097217 hsa-miR-331-5p 1 0 0
chr11:119096941|119097217 hsa-miR-6767-5p 1 1 0
chr11:119096941|119097217 hsa-miR-3186-3p 1 0 0
chr11:119096941|119097217 hsa-miR-3913-3p 0 1 0
chr11:119096941|119097217 hsa-miR-1207-5p 1 0 0
chr11:119096941|119097217 hsa-miR-6870-5p 1 0 0
chr11:119096941|119097217 hsa-miR-5001-5p 1 0 0
chr11:119096941|119097217 hsa-miR-6754-5p 0 1 0
chr11:119096941|119097217 hsa-miR-6722-3p 1 0 0
chr11:119096941|119097217 hsa-miR-6808-5p 1 0 0
chr11:119096941|119097217 hsa-miR-6780b-5p 1 0 0
chr11:119096941|119097217 hsa-miR-4726-5p 1 0 0
chr11:119096941|119097217 hsa-miR-6794-5p 1 0 0
chr11:119096941|119097217 hsa-miR-3199 1 0 0
chr11:119096941|119097217 hsa-miR-365b-5p 0 1 0
chr11:119096941|119097217 hsa-miR-6511a-5p 1 0 0
chr11:119096941|119097217 hsa-miR-3198 1 0 0
chr11:119096941|119097217 hsa-miR-6758-5p 1 0 0
chr11:119096941|119097217 hsa-miR-6773-5p 1 1 0
chr11:119096941|119097217 hsa-miR-4665-5p 1 0 0
chr11:119096941|119097217 hsa-miR-324-3p 1 1 0
chr11:119096941|119097217 hsa-miR-6876-5p 0 1 0
chr11:119096941|119097217 hsa-miR-378a-3p 0 1 0
chr11:119096941|119097217 hsa-miR-6724-5p 1 0 0
chr11:119096941|119097217 hsa-miR-10400-3p 1 0 0
chr11:119096941|119097217 hsa-miR-4756-5p 1 0 0
chr11:119096941|119097217 hsa-miR-4768-5p 0 1 0
chr11:119096941|119097217 hsa-miR-6838-5p 0 1 0
chr11:119096941|119097217 hsa-miR-10523-5p 0 1 0
chr11:119096941|119097217 hsa-miR-3689a-5p 1 0 0
chr11:119096941|119097217 hsa-miR-3689b-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:119096941|119097217
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MRDSYSSPFLLADPGQCHHLLHSISARSTLL
Nucleotide Sequence CTGCGTGATTCTTACTCCAGTCCATTTCTCCTTGCAGATCCTGGGCAGTGCCATCACCTTCTCCATTCGATATCAGCTCGTTCGACTCTTCTATGA
CircID chr11:119096941|119097217
ORF Type ORF2
Protein Length 69
Nucleotide Length 210
Protein Sequence MLLKVLGPIHERNLTLLLLLLQVRMGIEFIPPCLPFCVILTPVHFSLQILGSAITFSIRYQLVRLFYDV
Nucleotide Sequence TTGCTACTTAAAGTCCTTGGGCCCATACATGAGAGAAACCTCACATTGCTCCTGCTGCTGCTGCAGGTGAGGATGGGAATCGAGTTTATACCTCCGTGTCTCCCTTTCTGCGTGATTCTTACTCCAGTCCATTTCTCCTTGCAGATCCTGGGCAGTGCCATCACCTTCTCCATTCGATATCAGCTCGTTCGACTCTTCTATGATGTCTGA
CircID chr11:119096941|119097217
ORF Type ORF3
Protein Length 59
Nucleotide Length 180
Protein Sequence MISNGEGDGTAQDLQGEMDWSKNHAERETRRYKLDSHPHLQQQQEQCEVSLMYGPKDFK
Nucleotide Sequence CTGATATCGAATGGAGAAGGTGATGGCACTGCCCAGGATCTGCAAGGAGAAATGGACTGGAGTAAGAATCACGCAGAAAGGGAGACACGGAGGTATAAACTCGATTCCCATCCTCACCTGCAGCAGCAGCAGGAGCAATGTGAGGTTTCTCTCATGTATGGGCCCAAGGACTTTAAGTAG
CircID chr11:119096941|119097217
ORF Type ORF4
Protein Length 61
Nucleotide Length 183
Protein Sequence MEKVMALPRICKEKWTGVRITQKGRHGGINSIPILTCSSSRSNVRFLSCMGPRTLSSKLMR
Nucleotide Sequence ATGGAGAAGGTGATGGCACTGCCCAGGATCTGCAAGGAGAAATGGACTGGAGTAAGAATCACGCAGAAAGGGAGACACGGAGGTATAAACTCGATTCCCATCCTCACCTGCAGCAGCAGCAGGAGCAATGTGAGGTTTCTCTCATGTATGGGCCCAAGGACTTTAAGTAGCAAGTTGATGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab