CircRNA Information

General Information
circRNA Basic Information
CircID chr11:120485570|120485729
Strand +
CircType exon
Host Gene ENSG00000196914.7;
Algorism CIRI2;
Sequence CTGGGCACATAAGAGCCACACGGCATAGCATACCTTTGAGGTGACCCTCAGAGAAGCAGCCTACTGGACAGCAGAGAGCTTGGAATACTGTATAGTGAAGCAAGGTGCTCCTCCCTTCCCCGTCTCACTTCCTCCTCTTCTTAACCTCTCTACCCAACTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:120485570|120485729 hsa-miR-198 0 0 1
chr11:120485570|120485729 hsa-miR-144-5p 0 0 1
chr11:120485570|120485729 hsa-miR-144-3p 0 0 1
chr11:120485570|120485729 hsa-miR-626 0 0 1
chr11:120485570|120485729 hsa-miR-765 0 0 1
chr11:120485570|120485729 hsa-miR-760 0 0 1
chr11:120485570|120485729 hsa-miR-942-5p 0 0 1
chr11:120485570|120485729 hsa-miR-942-3p 0 0 1
chr11:120485570|120485729 hsa-miR-548m 0 1 1
chr11:120485570|120485729 hsa-miR-1284 0 1 1
chr11:120485570|120485729 hsa-miR-1321 0 0 1
chr11:120485570|120485729 hsa-miR-139-3p 0 0 1
chr11:120485570|120485729 hsa-miR-770-5p 0 0 1
chr11:120485570|120485729 hsa-miR-1225-5p 0 0 1
chr11:120485570|120485729 hsa-miR-483-5p 0 1 1
chr11:120485570|120485729 hsa-miR-455-5p 0 0 1
chr11:120485570|120485729 hsa-miR-644 0 0 1
chr11:120485570|120485729 hsa-miR-101 0 0 1
chr11:120485570|120485729 hsa-miR-3132 1 1 0
chr11:120485570|120485729 hsa-miR-3147 1 0 0
chr11:120485570|120485729 hsa-miR-3154 1 0 0
chr11:120485570|120485729 hsa-miR-4259 1 1 0
chr11:120485570|120485729 hsa-miR-4270 1 0 0
chr11:120485570|120485729 hsa-miR-4706 1 0 0
chr11:120485570|120485729 hsa-miR-4739 1 1 0
chr11:120485570|120485729 hsa-miR-5093 1 0 0
chr11:120485570|120485729 hsa-miR-5194 1 1 0
chr11:120485570|120485729 hsa-miR-6086 1 1 0
chr11:120485570|120485729 hsa-miR-6127 1 0 0
chr11:120485570|120485729 hsa-miR-12118 1 0 0
chr11:120485570|120485729 hsa-miR-4433b-3p 1 0 0
chr11:120485570|120485729 hsa-miR-6765-5p 1 1 0
chr11:120485570|120485729 hsa-miR-7106-5p 1 1 0
chr11:120485570|120485729 hsa-miR-6825-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6894-5p 1 0 0
chr11:120485570|120485729 hsa-miR-16-1-3p 0 1 0
chr11:120485570|120485729 hsa-miR-766-5p 0 1 0
chr11:120485570|120485729 hsa-miR-1236-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6089 1 0 0
chr11:120485570|120485729 hsa-miR-6880-5p 1 0 0
chr11:120485570|120485729 hsa-miR-7847-3p 1 0 0
chr11:120485570|120485729 hsa-miR-4695-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6890-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6762-3p 0 1 0
chr11:120485570|120485729 hsa-miR-197-5p 1 1 0
chr11:120485570|120485729 hsa-miR-6782-5p 1 0 0
chr11:120485570|120485729 hsa-miR-1229-5p 1 1 0
chr11:120485570|120485729 hsa-miR-1908-5p 1 0 0
chr11:120485570|120485729 hsa-miR-3202 0 1 0
chr11:120485570|120485729 hsa-miR-4787-5p 1 0 0
chr11:120485570|120485729 hsa-miR-149-3p 1 0 0
chr11:120485570|120485729 hsa-miR-6824-5p 1 0 0
chr11:120485570|120485729 hsa-miR-3162-5p 1 0 0
chr11:120485570|120485729 hsa-miR-7112-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6832-5p 0 1 0
chr11:120485570|120485729 hsa-miR-3200-3p 0 1 0
chr11:120485570|120485729 hsa-miR-1207-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6787-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6816-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6754-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6819-5p 1 0 0
chr11:120485570|120485729 hsa-miR-11181-3p 1 1 0
chr11:120485570|120485729 hsa-miR-1249-5p 1 1 0
chr11:120485570|120485729 hsa-miR-6797-5p 1 0 0
chr11:120485570|120485729 hsa-miR-7111-5p 1 0 0
chr11:120485570|120485729 hsa-miR-4728-5p 1 1 0
chr11:120485570|120485729 hsa-miR-5196-5p 1 1 0
chr11:120485570|120485729 hsa-miR-6780b-5p 1 0 0
chr11:120485570|120485729 hsa-miR-1237-5p 1 0 0
chr11:120485570|120485729 hsa-miR-4649-5p 1 0 0
chr11:120485570|120485729 hsa-miR-4725-3p 1 1 0
chr11:120485570|120485729 hsa-miR-4749-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6738-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6794-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6858-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6889-5p 1 0 0
chr11:120485570|120485729 hsa-miR-6831-5p 1 1 0
chr11:120485570|120485729 hsa-miR-6758-5p 0 1 0
chr11:120485570|120485729 hsa-miR-4716-3p 1 1 0
chr11:120485570|120485729 hsa-miR-4756-5p 1 1 0
chr11:120485570|120485729 hsa-miR-6876-3p 0 1 0
chr11:120485570|120485729 hsa-let-7f-2-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:120485570|120485729
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MDSRELGILYSEARCSSLPRLTSSSS
Nucleotide Sequence CTGGACAGCAGAGAGCTTGGAATACTGTATAGTGAAGCAAGGTGCTCCTCCCTTCCCCGTCTCACTTCCTCCTCTTCTTAA
CircID chr11:120485570|120485729
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MEYCIVKQGAPPFPVSLPPLLNLSTQL
Nucleotide Sequence TTGGAATACTGTATAGTGAAGCAAGGTGCTCCTCCCTTCCCCGTCTCACTTCCTCCTCTTCTTAACCTCTCTACCCAACTT
CircID chr11:120485570|120485729
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MLHYTVFQALCCPVGCFSEGHLKGMLCRVALMCP
Nucleotide Sequence TTGCTTCACTATACAGTATTCCAAGCTCTCTGCTGTCCAGTAGGCTGCTTCTCTGAGGGTCACCTCAAAGGTATGCTATGCCGTGTGGCTCTTATGTGCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab