CircRNA Information

General Information
circRNA Basic Information
CircID chr11:12237379|12237549
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence ACAGAGAGGAAGCGGAGACTGCACAAGGCTACAGACACATTCCATTTCCCAGATTACGGGTGTCAGCTCTCTAGCTTCAGGGCCTGGGATTTGCTCCTGCCTATTCCCAAGAAGCTTCCCTTGGGTACACTTTGTCTCAGGTGGAAGTCTTTTCCTATGTTTCACCCATGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:12237379|12237549 hsa-miR-99a-5p 0 0 1
chr11:12237379|12237549 hsa-miR-99a-3p 0 0 1
chr11:12237379|12237549 hsa-miR-100-5p 0 0 1
chr11:12237379|12237549 hsa-miR-100-3p 0 0 1
chr11:12237379|12237549 hsa-miR-206 0 0 1
chr11:12237379|12237549 hsa-miR-99b-5p 0 0 1
chr11:12237379|12237549 hsa-miR-99b-3p 0 0 1
chr11:12237379|12237549 hsa-miR-494-5p 0 0 1
chr11:12237379|12237549 hsa-miR-494-3p 0 0 1
chr11:12237379|12237549 hsa-miR-520g-5p 0 0 1
chr11:12237379|12237549 hsa-miR-520g-3p 0 0 1
chr11:12237379|12237549 hsa-miR-520h 0 0 1
chr11:12237379|12237549 hsa-miR-605-5p 0 0 1
chr11:12237379|12237549 hsa-miR-605-3p 0 0 1
chr11:12237379|12237549 hsa-miR-613 0 0 1
chr11:12237379|12237549 hsa-miR-617 0 1 1
chr11:12237379|12237549 hsa-miR-635 0 0 1
chr11:12237379|12237549 hsa-miR-940 1 0 1
chr11:12237379|12237549 hsa-miR-1291 0 1 1
chr11:12237379|12237549 hsa-miR-1262 0 1 1
chr11:12237379|12237549 hsa-miR-127-5p 0 1 1
chr11:12237379|12237549 hsa-miR-516a-3p 0 1 1
chr11:12237379|12237549 hsa-miR-1308 0 0 1
chr11:12237379|12237549 hsa-miR-1 0 0 1
chr11:12237379|12237549 hsa-miR-3137 0 1 0
chr11:12237379|12237549 hsa-miR-3155a 0 1 0
chr11:12237379|12237549 hsa-miR-3188 0 1 0
chr11:12237379|12237549 hsa-miR-4314 1 1 0
chr11:12237379|12237549 hsa-miR-3945 1 0 0
chr11:12237379|12237549 hsa-miR-4739 1 0 0
chr11:12237379|12237549 hsa-miR-8089 1 0 0
chr11:12237379|12237549 hsa-miR-143-5p 1 1 0
chr11:12237379|12237549 hsa-miR-6857-5p 1 0 0
chr11:12237379|12237549 hsa-miR-3192-5p 1 0 0
chr11:12237379|12237549 hsa-miR-4722-5p 0 1 0
chr11:12237379|12237549 hsa-miR-4755-3p 0 1 0
chr11:12237379|12237549 hsa-miR-6806-5p 1 1 0
chr11:12237379|12237549 hsa-miR-6721-5p 1 1 0
chr11:12237379|12237549 hsa-miR-6772-5p 1 0 0
chr11:12237379|12237549 hsa-miR-345-3p 0 1 0
chr11:12237379|12237549 hsa-miR-204-3p 0 1 0
chr11:12237379|12237549 hsa-miR-3160-3p 0 1 0
chr11:12237379|12237549 hsa-miR-6730-3p 0 1 0
chr11:12237379|12237549 hsa-miR-6814-5p 0 1 0
chr11:12237379|12237549 hsa-miR-4763-3p 1 1 0
chr11:12237379|12237549 hsa-miR-6893-5p 0 1 0
chr11:12237379|12237549 hsa-miR-6743-5p 1 0 0
chr11:12237379|12237549 hsa-miR-4701-3p 1 0 0
chr11:12237379|12237549 hsa-miR-939-5p 1 0 0
chr11:12237379|12237549 hsa-miR-6511a-5p 1 0 0
chr11:12237379|12237549 hsa-miR-4700-5p 1 0 0
chr11:12237379|12237549 hsa-miR-4646-5p 1 1 0
chr11:12237379|12237549 hsa-miR-3059-5p 0 1 0
chr11:12237379|12237549 hsa-miR-7162-5p 0 1 0
chr11:12237379|12237549 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr11:12237379|12237549
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MHKATDTFHFPDYGCQLSSFRAWDLLLPIPKKLPLGTLCLRWKSFPMFHPW
Nucleotide Sequence CTGCACAAGGCTACAGACACATTCCATTTCCCAGATTACGGGTGTCAGCTCTCTAGCTTCAGGGCCTGGGATTTGCTCCTGCCTATTCCCAAGAAGCTTCCCTTGGGTACACTTTGTCTCAGGTGGAAGTCTTTTCCTATGTTTCACCCATGG

CircID chr11:12237379|12237549
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MGFAPAYSQEASLGYTLSQVEVFSYVSPM
Nucleotide Sequence CTGGGATTTGCTCCTGCCTATTCCCAAGAAGCTTCCCTTGGGTACACTTTGTCTCAGGTGGAAGTCTTTTCCTATGTTTCACCCATG

CircID chr11:12237379|12237549
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MRQSVPKGSFLGIGRSKSQALKLES
Nucleotide Sequence CTGAGACAAAGTGTACCCAAGGGAAGCTTCTTGGGAATAGGCAGGAGCAAATCCCAGGCCCTGAAGCTAGAGAGCTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites