CircRNA Information

General Information
circRNA Basic Information
CircID chr11:12263378|12263606
Strand -
CircType exon
Host Gene ENSG00000133816.12;
Algorism CIRI2;
Sequence CGTGGAGCTGTCCTAGGCAACACTCGCGGTCTCAGGCTGCGGTGGGCGTCTGTCCTGCATGTGGCCCAGACCACCCTGACCCCCGGGCCTGCCTGCCTGGCCCTGCATGCTGCACGCTCACTGTATTTGTGCAGATCCTGGCCAGTACAAAGTCGTTGCTCTTGTCTTATCTTCTCTTACAGAGTCTCCCTCCCTTTATAGAATGTCAACCAAAGAGTGCCCTCCTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:12263378|12263606 hsa-miR-107 0 1 1
chr11:12263378|12263606 hsa-miR-340-5p 0 0 1
chr11:12263378|12263606 hsa-miR-340-3p 0 0 1
chr11:12263378|12263606 hsa-miR-335-5p 0 0 1
chr11:12263378|12263606 hsa-miR-335-3p 0 0 1
chr11:12263378|12263606 hsa-miR-489-5p 0 0 1
chr11:12263378|12263606 hsa-miR-489-3p 0 0 1
chr11:12263378|12263606 hsa-miR-193b-5p 0 0 1
chr11:12263378|12263606 hsa-miR-193b-3p 0 0 1
chr11:12263378|12263606 hsa-miR-563 0 0 1
chr11:12263378|12263606 hsa-miR-612 0 0 1
chr11:12263378|12263606 hsa-miR-641 0 0 1
chr11:12263378|12263606 hsa-miR-659-5p 0 0 1
chr11:12263378|12263606 hsa-miR-659-3p 0 0 1
chr11:12263378|12263606 hsa-miR-765 0 0 1
chr11:12263378|12263606 hsa-miR-891a-5p 0 0 1
chr11:12263378|12263606 hsa-miR-891a-3p 0 0 1
chr11:12263378|12263606 hsa-miR-892b 0 0 1
chr11:12263378|12263606 hsa-miR-940 0 1 1
chr11:12263378|12263606 hsa-miR-1286 0 0 1
chr11:12263378|12263606 hsa-miR-1293 1 1 1
chr11:12263378|12263606 hsa-miR-1253 0 0 1
chr11:12263378|12263606 hsa-miR-1321 0 0 1
chr11:12263378|12263606 hsa-miR-1197 0 0 1
chr11:12263378|12263606 hsa-miR-769-5p 0 0 1
chr11:12263378|12263606 hsa-miR-142-5p 0 0 1
chr11:12263378|12263606 hsa-miR-193a-3p 0 0 1
chr11:12263378|12263606 hsa-miR-1280 0 0 1
chr11:12263378|12263606 hsa-miR-323-5p 0 0 1
chr11:12263378|12263606 hsa-miR-103 0 0 1
chr11:12263378|12263606 hsa-miR-9 0 0 1
chr11:12263378|12263606 hsa-miR-1285 0 0 1
chr11:12263378|12263606 hsa-miR-184 1 0 0
chr11:12263378|12263606 hsa-miR-608 1 0 0
chr11:12263378|12263606 hsa-miR-663a 1 0 0
chr11:12263378|12263606 hsa-miR-762 1 0 0
chr11:12263378|12263606 hsa-miR-1183 1 0 0
chr11:12263378|12263606 hsa-miR-3141 1 0 0
chr11:12263378|12263606 hsa-miR-4281 1 0 0
chr11:12263378|12263606 hsa-miR-4329 0 1 0
chr11:12263378|12263606 hsa-miR-3659 1 1 0
chr11:12263378|12263606 hsa-miR-3686 0 1 0
chr11:12263378|12263606 hsa-miR-3918 0 1 0
chr11:12263378|12263606 hsa-miR-4436a 0 1 0
chr11:12263378|12263606 hsa-miR-4483 0 1 0
chr11:12263378|12263606 hsa-miR-4510 0 1 0
chr11:12263378|12263606 hsa-miR-4514 1 1 0
chr11:12263378|12263606 hsa-miR-4651 1 0 0
chr11:12263378|12263606 hsa-miR-4658 0 1 0
chr11:12263378|12263606 hsa-miR-4673 1 1 0
chr11:12263378|12263606 hsa-miR-4692 1 1 0
chr11:12263378|12263606 hsa-miR-4736 1 0 0
chr11:12263378|12263606 hsa-miR-4739 1 1 0
chr11:12263378|12263606 hsa-miR-5787 1 0 0
chr11:12263378|12263606 hsa-miR-6127 1 0 0
chr11:12263378|12263606 hsa-miR-6132 0 1 0
chr11:12263378|12263606 hsa-miR-6860 1 0 0
chr11:12263378|12263606 hsa-miR-8085 1 0 0
chr11:12263378|12263606 hsa-miR-9-5p 0 1 0
chr11:12263378|12263606 hsa-miR-4435 0 1 0
chr11:12263378|12263606 hsa-miR-4747-3p 0 1 0
chr11:12263378|12263606 hsa-miR-4700-3p 0 1 0
chr11:12263378|12263606 hsa-miR-323a-5p 1 1 0
chr11:12263378|12263606 hsa-miR-4665-3p 1 0 0
chr11:12263378|12263606 hsa-miR-7106-5p 1 1 0
chr11:12263378|12263606 hsa-miR-6089 1 0 0
chr11:12263378|12263606 hsa-miR-6880-5p 1 0 0
chr11:12263378|12263606 hsa-miR-4722-5p 1 0 0
chr11:12263378|12263606 hsa-miR-3622b-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6721-5p 1 0 0
chr11:12263378|12263606 hsa-miR-2467-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6760-5p 0 1 0
chr11:12263378|12263606 hsa-miR-6782-5p 1 0 0
chr11:12263378|12263606 hsa-miR-4793-3p 1 0 0
chr11:12263378|12263606 hsa-miR-1226-5p 1 0 0
chr11:12263378|12263606 hsa-miR-4707-3p 0 1 0
chr11:12263378|12263606 hsa-miR-4640-5p 1 1 0
chr11:12263378|12263606 hsa-miR-4690-5p 0 1 0
chr11:12263378|12263606 hsa-miR-3202 1 0 0
chr11:12263378|12263606 hsa-miR-4787-5p 0 1 0
chr11:12263378|12263606 hsa-miR-103a-3p 0 1 0
chr11:12263378|12263606 hsa-miR-149-3p 1 1 0
chr11:12263378|12263606 hsa-miR-6895-5p 0 1 0
chr11:12263378|12263606 hsa-miR-423-5p 1 0 0
chr11:12263378|12263606 hsa-miR-3944-5p 0 1 0
chr11:12263378|12263606 hsa-miR-1295b-3p 1 0 0
chr11:12263378|12263606 hsa-miR-4778-5p 0 1 0
chr11:12263378|12263606 hsa-miR-1207-5p 1 0 0
chr11:12263378|12263606 hsa-miR-1233-5p 1 0 0
chr11:12263378|12263606 hsa-miR-4763-3p 1 0 0
chr11:12263378|12263606 hsa-miR-6778-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6893-5p 1 1 0
chr11:12263378|12263606 hsa-miR-6743-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6754-5p 1 1 0
chr11:12263378|12263606 hsa-miR-6756-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6803-5p 1 1 0
chr11:12263378|12263606 hsa-miR-7107-5p 1 0 0
chr11:12263378|12263606 hsa-miR-1249-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6722-3p 1 0 0
chr11:12263378|12263606 hsa-miR-6751-5p 1 1 0
chr11:12263378|12263606 hsa-miR-6779-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6780a-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6797-5p 1 1 0
chr11:12263378|12263606 hsa-miR-6808-5p 1 1 0
chr11:12263378|12263606 hsa-miR-6875-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6879-5p 1 0 0
chr11:12263378|12263606 hsa-miR-4728-5p 1 1 0
chr11:12263378|12263606 hsa-miR-5189-5p 1 0 0
chr11:12263378|12263606 hsa-miR-5196-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6780b-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6836-5p 1 1 0
chr11:12263378|12263606 hsa-miR-6862-5p 1 0 0
chr11:12263378|12263606 hsa-miR-328-5p 1 0 0
chr11:12263378|12263606 hsa-miR-4649-5p 1 0 0
chr11:12263378|12263606 hsa-miR-4726-5p 1 1 0
chr11:12263378|12263606 hsa-miR-4745-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6735-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6794-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6795-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6858-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6883-5p 1 1 0
chr11:12263378|12263606 hsa-miR-6887-5p 1 0 0
chr11:12263378|12263606 hsa-miR-4723-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6885-5p 1 0 0
chr11:12263378|12263606 hsa-miR-10394-3p 1 0 0
chr11:12263378|12263606 hsa-miR-4665-5p 1 0 0
chr11:12263378|12263606 hsa-miR-4747-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6891-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6785-5p 1 0 0
chr11:12263378|12263606 hsa-miR-1185-1-3p 1 1 0
chr11:12263378|12263606 hsa-miR-1185-2-3p 1 1 0
chr11:12263378|12263606 hsa-miR-6724-5p 1 0 0
chr11:12263378|12263606 hsa-miR-6791-5p 1 0 0
chr11:12263378|12263606 hsa-miR-4756-5p 1 1 0
chr11:12263378|12263606 hsa-miR-433-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:12263378|12263606
ORF Type ORF1
Protein Length 54
Nucleotide Length 165
Protein Sequence MRWASVLHVAQTTLTPGPACLALHAARSLYLCRSWPVQSRCSCLIFSYRVSLPL
Nucleotide Sequence CTGCGGTGGGCGTCTGTCCTGCATGTGGCCCAGACCACCCTGACCCCCGGGCCTGCCTGCCTGGCCCTGCATGCTGCACGCTCACTGTATTTGTGCAGATCCTGGCCAGTACAAAGTCGTTGCTCTTGTCTTATCTTCTCTTACAGAGTCTCCCTCCCTTTATAG
CircID chr11:12263378|12263606
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MPAWPCMLHAHCICADPGQYKVVALVLSSLTESPSLYRMSTKECPPP
Nucleotide Sequence CTGCCTGCCTGGCCCTGCATGCTGCACGCTCACTGTATTTGTGCAGATCCTGGCCAGTACAAAGTCGTTGCTCTTGTCTTATCTTCTCTTACAGAGTCTCCCTCCCTTTATAGAATGTCAACCAAAGAGTGCCCTCCTCCC
CircID chr11:12263378|12263606
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MPGPACCTLTVFVQILASTKSLLLSYLLLQSLPPFIECQPKSALL
Nucleotide Sequence CTGCCTGGCCCTGCATGCTGCACGCTCACTGTATTTGTGCAGATCCTGGCCAGTACAAAGTCGTTGCTCTTGTCTTATCTTCTCTTACAGAGTCTCCCTCCCTTTATAGAATGTCAACCAAAGAGTGCCCTCCTC
CircID chr11:12263378|12263606
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MARICTNTVSVQHAGPGRQARGSGWSGPHAGQTPTAA
Nucleotide Sequence CTGGCCAGGATCTGCACAAATACAGTGAGCGTGCAGCATGCAGGGCCAGGCAGGCAGGCCCGGGGGTCAGGGTGGTCTGGGCCACATGCAGGACAGACGCCCACCGCAGCCTGA
CircID chr11:12263378|12263606
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MQGQAGRPGGQGGLGHMQDRRPPQPETASVA
Nucleotide Sequence ATGCAGGGCCAGGCAGGCAGGCCCGGGGGTCAGGGTGGTCTGGGCCACATGCAGGACAGACGCCCACCGCAGCCTGAGACCGCGAGTGTTGCCTAG
CircID chr11:12263378|12263606
ORF Type ORF6
Protein Length 44
Nucleotide Length 132
Protein Sequence MHKYSERAACRARQAGPGVRVVWATCRTDAHRSLRPRVLPRTAP
Nucleotide Sequence CTGCACAAATACAGTGAGCGTGCAGCATGCAGGGCCAGGCAGGCAGGCCCGGGGGTCAGGGTGGTCTGGGCCACATGCAGGACAGACGCCCACCGCAGCCTGAGACCGCGAGTGTTGCCTAGGACAGCTCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab