CircRNA Information

General Information
circRNA Basic Information
CircID chr11:123058746|123059136
Strand -
CircType exon
Host Gene ENSG00000109971.12;
Algorism CIRI2;
Sequence CTCGGGGTGCAGGAGGTATGCCTGTGAGTTCAAACTTGCCAAGCAGGTTGTTATCCTTTGTCATGGCACGCTCGCCTTCATAAACCTTGGTAGGAAATAAAACAAATTACTACAATGGACTCCAGGTCTGTGACAGTGCTAGGGTCCTGCTAAGGAAGAATGGTCGCTCAAACATCCAAGGAAGGAACTGGCCAACATAAGACTTTCTGGTGGAAACTACGAATGGTTTTGGAATCCATCATCATAGCGAGTCAGTCAAGACTTCCCTTTATCTGTTATCAGTAAGCCAAACAAGAGAAGTACAGAAACATACCTGAATAAGCACACCAGGCTGGTTGTCAGAATAGGTAGTGAAGGTCTGTGTCTGCTTGGTAGGAATGGTGGTATTACG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:123058746|123059136 hsa-miR-31-5p 0 0 1
chr11:123058746|123059136 hsa-miR-31-3p 0 0 1
chr11:123058746|123059136 hsa-miR-182-5p 0 0 1
chr11:123058746|123059136 hsa-miR-182-3p 0 0 1
chr11:123058746|123059136 hsa-miR-345-5p 0 0 1
chr11:123058746|123059136 hsa-miR-345-3p 0 0 1
chr11:123058746|123059136 hsa-miR-384 0 0 1
chr11:123058746|123059136 hsa-miR-567 0 0 1
chr11:123058746|123059136 hsa-miR-577 0 0 1
chr11:123058746|123059136 hsa-miR-588 0 0 1
chr11:123058746|123059136 hsa-miR-619-5p 0 0 1
chr11:123058746|123059136 hsa-miR-619-3p 0 0 1
chr11:123058746|123059136 hsa-miR-631 0 0 1
chr11:123058746|123059136 hsa-miR-636 0 0 1
chr11:123058746|123059136 hsa-miR-1264 0 0 1
chr11:123058746|123059136 hsa-miR-942-5p 0 0 1
chr11:123058746|123059136 hsa-miR-942-3p 0 0 1
chr11:123058746|123059136 hsa-miR-943 0 0 1
chr11:123058746|123059136 hsa-miR-1286 0 0 1
chr11:123058746|123059136 hsa-miR-1246 0 0 1
chr11:123058746|123059136 hsa-miR-1272 0 1 1
chr11:123058746|123059136 hsa-miR-1322 0 0 1
chr11:123058746|123059136 hsa-miR-1289 0 0 1
chr11:123058746|123059136 hsa-miR-875-5p 0 0 1
chr11:123058746|123059136 hsa-miR-502-5p 0 0 1
chr11:123058746|123059136 hsa-miR-513a-5p 0 0 1
chr11:123058746|123059136 hsa-miR-220c 0 0 1
chr11:123058746|123059136 hsa-miR-218 0 0 1
chr11:123058746|123059136 hsa-miR-549 0 0 1
chr11:123058746|123059136 hsa-miR-602 1 0 0
chr11:123058746|123059136 hsa-miR-1976 0 1 0
chr11:123058746|123059136 hsa-miR-3134 0 1 0
chr11:123058746|123059136 hsa-miR-3166 0 1 0
chr11:123058746|123059136 hsa-miR-1268b 1 0 0
chr11:123058746|123059136 hsa-miR-4526 1 0 0
chr11:123058746|123059136 hsa-miR-5708 0 1 0
chr11:123058746|123059136 hsa-miR-6084 1 0 0
chr11:123058746|123059136 hsa-miR-9500 0 1 0
chr11:123058746|123059136 hsa-miR-12122 0 1 0
chr11:123058746|123059136 hsa-miR-105-3p 1 0 0
chr11:123058746|123059136 hsa-miR-150-3p 1 0 0
chr11:123058746|123059136 hsa-miR-6875-3p 0 1 0
chr11:123058746|123059136 hsa-miR-6849-3p 0 1 0
chr11:123058746|123059136 hsa-miR-6770-5p 1 0 0
chr11:123058746|123059136 hsa-miR-1226-5p 1 0 0
chr11:123058746|123059136 hsa-miR-4778-3p 0 1 0
chr11:123058746|123059136 hsa-miR-6837-3p 0 1 0
chr11:123058746|123059136 hsa-miR-493-3p 1 0 0
chr11:123058746|123059136 hsa-miR-3670 0 1 0
chr11:123058746|123059136 hsa-miR-499b-5p 1 0 0
chr11:123058746|123059136 hsa-miR-26a-1-3p 0 1 0
chr11:123058746|123059136 hsa-miR-1343-5p 1 0 0
chr11:123058746|123059136 hsa-miR-6780b-5p 0 1 0
chr11:123058746|123059136 hsa-miR-6836-5p 1 1 0
chr11:123058746|123059136 hsa-miR-6889-5p 1 0 0
chr11:123058746|123059136 hsa-miR-7107-3p 1 0 0
chr11:123058746|123059136 hsa-miR-9902 0 1 0
chr11:123058746|123059136 hsa-miR-4670-5p 0 1 0
chr11:123058746|123059136 hsa-miR-374b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:123058746|123059136
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MVAQTSKEGTGQHKTFWWKLRMVLESIIIASQSRLPFICYQ
Nucleotide Sequence ATGGTCGCTCAAACATCCAAGGAAGGAACTGGCCAACATAAGACTTTCTGGTGGAAACTACGAATGGTTTTGGAATCCATCATCATAGCGAGTCAGTCAAGACTTCCCTTTATCTGTTATCAGTAA
CircID chr11:123058746|123059136
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MNKHTRLVVRIGSEGLCLLGRNGGIT
Nucleotide Sequence CTGAATAAGCACACCAGGCTGGTTGTCAGAATAGGTAGTGAAGGTCTGTGTCTGCTTGGTAGGAATGGTGGTATTACG
CircID chr11:123058746|123059136
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MVGNKTNYYNGLQVCDSARVLLRKNGRSNIQGRNWPT
Nucleotide Sequence TTGGTAGGAAATAAAACAAATTACTACAATGGACTCCAGGTCTGTGACAGTGCTAGGGTCCTGCTAAGGAAGAATGGTCGCTCAAACATCCAAGGAAGGAACTGGCCAACATAA
CircID chr11:123058746|123059136
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MVETTNGFGIHHHSESVKTSLYLLSVSQTREVQKHT
Nucleotide Sequence CTGGTGGAAACTACGAATGGTTTTGGAATCCATCATCATAGCGAGTCAGTCAAGACTTCCCTTTATCTGTTATCAGTAAGCCAAACAAGAGAAGTACAGAAACATACCTGA
CircID chr11:123058746|123059136
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MTTSLVCLFRYVSVLLLFGLLITDKGKS
Nucleotide Sequence CTGACAACCAGCCTGGTGTGCTTATTCAGGTATGTTTCTGTACTTCTCTTGTTTGGCTTACTGATAACAGATAAAGGGAAGTCTTGA
CircID chr11:123058746|123059136
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MMMDSKTIRSFHQKVLCWPVPSLDV
Nucleotide Sequence ATGATGATGGATTCCAAAACCATTCGTAGTTTCCACCAGAAAGTCTTATGTTGGCCAGTTCCTTCCTTGGATGTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab