CircRNA Information

General Information
circRNA Basic Information
CircID chr11:125643814|125644162
Strand -
CircType exon
Host Gene ENSG00000149554.11;
Algorism CIRI2;
Sequence TTCAGGTGGTGTGTCAGAGTCTCCCAGTGGATTTTCTAAGCACATTCAATCCAATTTGGACTTCTCTCCAGTAAACAGTGCTTCTAGGTAAGACTGATAAAGATTGAGTAGTTTTTGATTGTAGTATTCCCCATGAAGAATAATACATGTATGTGTTTTTTCATAATAATCGACATTAACATAATACTGTAAGCATGAGAACTTGTGTGTGATATAAGAAAGGCCTGATAGATTTTATTTTATTAAATGTATGTTTCTTTCTGTCTTAATGCCTCAGTGAAGAAAATGTGAAGTACTCCAGTTCTCAGCCAGAACCCCGCACAGGTCTTTCCTTATGGGATACCAGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:125643814|125644162 hsa-miR-23a-5p 0 0 1
chr11:125643814|125644162 hsa-miR-23a-3p 0 0 1
chr11:125643814|125644162 hsa-miR-208a-5p 0 0 1
chr11:125643814|125644162 hsa-miR-208a-3p 0 0 1
chr11:125643814|125644162 hsa-miR-23b-5p 0 0 1
chr11:125643814|125644162 hsa-miR-23b-3p 0 0 1
chr11:125643814|125644162 hsa-miR-144-5p 0 0 1
chr11:125643814|125644162 hsa-miR-144-3p 0 0 1
chr11:125643814|125644162 hsa-miR-146a-5p 0 0 1
chr11:125643814|125644162 hsa-miR-146a-3p 0 0 1
chr11:125643814|125644162 hsa-miR-149-5p 0 0 1
chr11:125643814|125644162 hsa-miR-149-3p 0 0 1
chr11:125643814|125644162 hsa-miR-185-5p 0 0 1
chr11:125643814|125644162 hsa-miR-185-3p 0 0 1
chr11:125643814|125644162 hsa-miR-377-5p 0 0 1
chr11:125643814|125644162 hsa-miR-377-3p 0 0 1
chr11:125643814|125644162 hsa-miR-452-5p 0 0 1
chr11:125643814|125644162 hsa-miR-452-3p 0 0 1
chr11:125643814|125644162 hsa-miR-412-5p 0 0 1
chr11:125643814|125644162 hsa-miR-412-3p 0 0 1
chr11:125643814|125644162 hsa-miR-494-5p 0 0 1
chr11:125643814|125644162 hsa-miR-494-3p 0 0 1
chr11:125643814|125644162 hsa-miR-569 0 0 1
chr11:125643814|125644162 hsa-miR-589-5p 0 0 1
chr11:125643814|125644162 hsa-miR-589-3p 0 0 1
chr11:125643814|125644162 hsa-miR-600 0 0 1
chr11:125643814|125644162 hsa-miR-606 0 0 1
chr11:125643814|125644162 hsa-miR-622 0 0 1
chr11:125643814|125644162 hsa-miR-636 0 0 1
chr11:125643814|125644162 hsa-miR-641 0 0 1
chr11:125643814|125644162 hsa-miR-888-5p 0 0 1
chr11:125643814|125644162 hsa-miR-888-3p 0 0 1
chr11:125643814|125644162 hsa-miR-147b-5p 0 0 1
chr11:125643814|125644162 hsa-miR-147b-3p 0 0 1
chr11:125643814|125644162 hsa-miR-744-5p 0 0 1
chr11:125643814|125644162 hsa-miR-744-3p 0 0 1
chr11:125643814|125644162 hsa-miR-208b-5p 0 0 1
chr11:125643814|125644162 hsa-miR-208b-3p 0 0 1
chr11:125643814|125644162 hsa-miR-1208 0 0 1
chr11:125643814|125644162 hsa-miR-1243 0 0 1
chr11:125643814|125644162 hsa-miR-1827 0 0 1
chr11:125643814|125644162 hsa-miR-361-5p 0 0 1
chr11:125643814|125644162 hsa-miR-582-5p 0 0 1
chr11:125643814|125644162 hsa-miR-146b-5p 0 1 1
chr11:125643814|125644162 hsa-miR-362-3p 0 0 1
chr11:125643814|125644162 hsa-miR-220b 0 0 1
chr11:125643814|125644162 hsa-miR-1308 0 0 1
chr11:125643814|125644162 hsa-miR-218 0 0 1
chr11:125643814|125644162 hsa-miR-329 0 0 1
chr11:125643814|125644162 hsa-miR-499-5p 0 0 1
chr11:125643814|125644162 hsa-miR-101 0 0 1
chr11:125643814|125644162 hsa-miR-3142 0 1 0
chr11:125643814|125644162 hsa-miR-4450 1 0 0
chr11:125643814|125644162 hsa-miR-4478 1 0 0
chr11:125643814|125644162 hsa-miR-4521 0 1 0
chr11:125643814|125644162 hsa-miR-4656 1 1 0
chr11:125643814|125644162 hsa-miR-4706 1 0 0
chr11:125643814|125644162 hsa-miR-5194 1 0 0
chr11:125643814|125644162 hsa-miR-5787 1 0 0
chr11:125643814|125644162 hsa-miR-12120 1 0 0
chr11:125643814|125644162 hsa-miR-671-5p 1 0 0
chr11:125643814|125644162 hsa-miR-3192-5p 0 1 0
chr11:125643814|125644162 hsa-miR-769-5p 1 0 0
chr11:125643814|125644162 hsa-miR-3064-5p 1 1 0
chr11:125643814|125644162 hsa-miR-4474-3p 1 0 0
chr11:125643814|125644162 hsa-miR-200b-5p 0 1 0
chr11:125643814|125644162 hsa-miR-6742-5p 1 0 0
chr11:125643814|125644162 hsa-miR-6796-5p 1 1 0
chr11:125643814|125644162 hsa-miR-6821-5p 1 0 0
chr11:125643814|125644162 hsa-miR-193b-5p 1 0 0
chr11:125643814|125644162 hsa-miR-6730-3p 0 1 0
chr11:125643814|125644162 hsa-miR-4714-5p 0 1 0
chr11:125643814|125644162 hsa-miR-4650-5p 0 1 0
chr11:125643814|125644162 hsa-miR-6775-5p 1 0 0
chr11:125643814|125644162 hsa-miR-5001-5p 0 1 0
chr11:125643814|125644162 hsa-miR-6756-5p 1 0 0
chr11:125643814|125644162 hsa-miR-10401-5p 1 0 0
chr11:125643814|125644162 hsa-miR-10396a-5p 1 0 0
chr11:125643814|125644162 hsa-miR-4749-5p 1 0 0
chr11:125643814|125644162 hsa-miR-6855-5p 1 0 0
chr11:125643814|125644162 hsa-miR-4646-5p 1 0 0
chr11:125643814|125644162 hsa-miR-6791-5p 1 0 0
chr11:125643814|125644162 hsa-miR-6504-5p 0 1 0
chr11:125643814|125644162 hsa-miR-200c-5p 1 1 0
chr11:125643814|125644162 hsa-miR-1245b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:125643814|125644162
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MIVVFPMKNNTCMCFFIIIDINIIL
Nucleotide Sequence TTGATTGTAGTATTCCCCATGAAGAATAATACATGTATGTGTTTTTTCATAATAATCGACATTAACATAATACTGTAA
CircID chr11:125643814|125644162
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence MYYSSWGILQSKTTQSLSVLPRSTVYWREVQIGLNVLRKSTGRL
Nucleotide Sequence ATGTATTATTCTTCATGGGGAATACTACAATCAAAAACTACTCAATCTTTATCAGTCTTACCTAGAAGCACTGTTTACTGGAGAGAAGTCCAAATTGGATTGAATGTGCTTAGAAAATCCACTGGGAGACTCTGA
CircID chr11:125643814|125644162
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MLMSIIMKKHIHVLFFMGNTTIKNYSIFISLT
Nucleotide Sequence ATGTTAATGTCGATTATTATGAAAAAACACATACATGTATTATTCTTCATGGGGAATACTACAATCAAAAACTACTCAATCTTTATCAGTCTTACCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab