CircRNA Information

General Information
circRNA Basic Information
CircID chr11:1261643|1261883
Strand -
CircType exon
Host Gene ENSG00000117983.16;
Algorism CIRI2;
Sequence CTGGAGCCAGGATGTGCATTGTCTGATCATGAAAACCTTGGGCCTCCTCTGCGGAGCCCCCCGGCCTGTGTGTGGCACCCCGCGCTCCGTGCTCCTGCTGCCCACCCCGTGGGTGAAACCGGCCCCAGAAGGGTGAGGGGCCAGCAGGACCCCTTTCGGGAGGGCGCCACTCAGGAGTCCTACCCTGGGAGAGCCTGTGGCCCACCTTGGCCTTGCCCCTCCCTGATGTCACTGGGACGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:1261643|1261883 hsa-miR-214-5p 0 0 1
chr11:1261643|1261883 hsa-miR-214-3p 0 0 1
chr11:1261643|1261883 hsa-miR-149-5p 0 0 1
chr11:1261643|1261883 hsa-miR-149-3p 0 0 1
chr11:1261643|1261883 hsa-miR-150-5p 0 0 1
chr11:1261643|1261883 hsa-miR-150-3p 0 0 1
chr11:1261643|1261883 hsa-miR-370-5p 0 0 1
chr11:1261643|1261883 hsa-miR-370-3p 0 0 1
chr11:1261643|1261883 hsa-miR-383-5p 0 0 1
chr11:1261643|1261883 hsa-miR-383-3p 0 0 1
chr11:1261643|1261883 hsa-miR-433-5p 0 0 1
chr11:1261643|1261883 hsa-miR-433-3p 0 0 1
chr11:1261643|1261883 hsa-miR-484 0 0 1
chr11:1261643|1261883 hsa-miR-489-5p 0 0 1
chr11:1261643|1261883 hsa-miR-489-3p 0 0 1
chr11:1261643|1261883 hsa-miR-608 1 0 1
chr11:1261643|1261883 hsa-miR-637 0 0 1
chr11:1261643|1261883 hsa-miR-541-5p 0 0 1
chr11:1261643|1261883 hsa-miR-541-3p 0 0 1
chr11:1261643|1261883 hsa-miR-1227-5p 0 0 1
chr11:1261643|1261883 hsa-miR-1227-3p 0 0 1
chr11:1261643|1261883 hsa-miR-1237-5p 0 0 1
chr11:1261643|1261883 hsa-miR-1237-3p 0 0 1
chr11:1261643|1261883 hsa-miR-1200 0 0 1
chr11:1261643|1261883 hsa-miR-1321 0 0 1
chr11:1261643|1261883 hsa-miR-1324 0 0 1
chr11:1261643|1261883 hsa-miR-532-3p 0 0 1
chr11:1261643|1261883 hsa-miR-615-5p 0 0 1
chr11:1261643|1261883 hsa-miR-423-5p 0 1 1
chr11:1261643|1261883 hsa-miR-654-5p 0 1 1
chr11:1261643|1261883 hsa-miR-566 0 0 1
chr11:1261643|1261883 hsa-miR-342-5p 0 0 1
chr11:1261643|1261883 hsa-miR-658 1 0 0
chr11:1261643|1261883 hsa-miR-3155a 0 1 0
chr11:1261643|1261883 hsa-miR-3166 0 1 0
chr11:1261643|1261883 hsa-miR-4449 1 0 0
chr11:1261643|1261883 hsa-miR-3155b 0 1 0
chr11:1261643|1261883 hsa-miR-4651 1 0 0
chr11:1261643|1261883 hsa-miR-4688 0 1 0
chr11:1261643|1261883 hsa-miR-4706 1 0 0
chr11:1261643|1261883 hsa-miR-4739 0 1 0
chr11:1261643|1261883 hsa-miR-4741 1 0 0
chr11:1261643|1261883 hsa-miR-5190 0 1 0
chr11:1261643|1261883 hsa-miR-5572 1 0 0
chr11:1261643|1261883 hsa-miR-5787 1 0 0
chr11:1261643|1261883 hsa-miR-6085 1 0 0
chr11:1261643|1261883 hsa-miR-6165 0 1 0
chr11:1261643|1261883 hsa-miR-12128 0 1 0
chr11:1261643|1261883 hsa-miR-3663-3p 1 0 0
chr11:1261643|1261883 hsa-miR-6089 1 1 0
chr11:1261643|1261883 hsa-miR-4722-5p 0 1 0
chr11:1261643|1261883 hsa-miR-6768-5p 0 1 0
chr11:1261643|1261883 hsa-miR-2467-5p 1 0 0
chr11:1261643|1261883 hsa-miR-6881-5p 0 1 0
chr11:1261643|1261883 hsa-miR-2467-3p 1 0 0
chr11:1261643|1261883 hsa-miR-6782-5p 1 0 0
chr11:1261643|1261883 hsa-miR-5008-5p 1 0 0
chr11:1261643|1261883 hsa-miR-4793-5p 0 1 0
chr11:1261643|1261883 hsa-miR-4783-3p 1 0 0
chr11:1261643|1261883 hsa-miR-6749-5p 1 0 0
chr11:1261643|1261883 hsa-miR-4743-5p 1 0 0
chr11:1261643|1261883 hsa-miR-3648 1 0 0
chr11:1261643|1261883 hsa-miR-6824-5p 1 0 0
chr11:1261643|1261883 hsa-miR-6742-3p 0 1 0
chr11:1261643|1261883 hsa-miR-3922-5p 0 1 0
chr11:1261643|1261883 hsa-miR-2277-5p 1 1 0
chr11:1261643|1261883 hsa-miR-4283 0 1 0
chr11:1261643|1261883 hsa-miR-6812-5p 1 0 0
chr11:1261643|1261883 hsa-miR-1343-5p 1 0 0
chr11:1261643|1261883 hsa-miR-5001-5p 1 1 0
chr11:1261643|1261883 hsa-miR-6743-5p 0 1 0
chr11:1261643|1261883 hsa-miR-6756-5p 1 1 0
chr11:1261643|1261883 hsa-miR-6769a-5p 0 1 0
chr11:1261643|1261883 hsa-miR-6803-5p 1 0 0
chr11:1261643|1261883 hsa-miR-6819-5p 1 0 0
chr11:1261643|1261883 hsa-miR-4728-5p 0 1 0
chr11:1261643|1261883 hsa-miR-5189-5p 0 1 0
chr11:1261643|1261883 hsa-miR-10396a-5p 1 0 0
chr11:1261643|1261883 hsa-miR-328-5p 1 1 0
chr11:1261643|1261883 hsa-miR-4649-5p 1 1 0
chr11:1261643|1261883 hsa-miR-4749-5p 1 0 0
chr11:1261643|1261883 hsa-miR-6846-5p 0 1 0
chr11:1261643|1261883 hsa-miR-6848-5p 1 0 0
chr11:1261643|1261883 hsa-miR-6885-5p 1 1 0
chr11:1261643|1261883 hsa-miR-939-5p 1 0 0
chr11:1261643|1261883 hsa-miR-3085-5p 1 1 0
chr11:1261643|1261883 hsa-miR-4664-5p 1 1 0
chr11:1261643|1261883 hsa-miR-7151-3p 1 0 0
chr11:1261643|1261883 hsa-miR-6766-5p 0 1 0
chr11:1261643|1261883 hsa-miR-6785-5p 0 1 0
chr11:1261643|1261883 hsa-miR-3184-5p 0 1 0
chr11:1261643|1261883 hsa-miR-6893-3p 0 1 0
chr11:1261643|1261883 hsa-miR-6862-3p 0 1 0
chr11:1261643|1261883 hsa-miR-10400-3p 1 1 0
chr11:1261643|1261883 hsa-miR-3619-5p 0 1 0
chr11:1261643|1261883 hsa-miR-6764-5p 0 1 0
chr11:1261643|1261883 hsa-miR-128-2-5p 0 1 0
chr11:1261643|1261883 hsa-miR-3117-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr11:1261643|1261883
ORF Type ORF1
Protein Length 80
Nucleotide Length 240
Protein Sequence LEPGCALSDHENLGPPLRSPPACVWHPALRAPAAHPVGETGPRRVRGQQDPFREGATQESYPGRACGPPWPCPSLMSLGR
Nucleotide Sequence CTGGAGCCAGGATGTGCATTGTCTGATCATGAAAACCTTGGGCCTCCTCTGCGGAGCCCCCCGGCCTGTGTGTGGCACCCCGCGCTCCGTGCTCCTGCTGCCCACCCCGTGGGTGAAACCGGCCCCAGAAGGGTGAGGGGCCAGCAGGACCCCTTTCGGGAGGGCGCCACTCAGGAGTCCTACCCTGGGAGAGCCTGTGGCCCACCTTGGCCTTGCCCCTCCCTGATGTCACTGGGACGC
CircID chr11:1261643|1261883
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MIMKTLGLLCGAPRPVCGTPRSVLLLPTPWVKPAPEG
Nucleotide Sequence CTGATCATGAAAACCTTGGGCCTCCTCTGCGGAGCCCCCCGGCCTGTGTGTGGCACCCCGCGCTCCGTGCTCCTGCTGCCCACCCCGTGGGTGAAACCGGCCCCAGAAGGGTGA
CircID chr11:1261643|1261883
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MSGALPKGVLLAPHPSGAGFTHGVGSRSTERGVPHTGRGAPQRRPKVFMIRQCTSWLQ
Nucleotide Sequence CTGAGTGGCGCCCTCCCGAAAGGGGTCCTGCTGGCCCCTCACCCTTCTGGGGCCGGTTTCACCCACGGGGTGGGCAGCAGGAGCACGGAGCGCGGGGTGCCACACACAGGCCGGGGGGCTCCGCAGAGGAGGCCCAAGGTTTTCATGATCAGACAATGCACATCCTGGCTCCAG
CircID chr11:1261643|1261883
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MGPVSPTGWAAGARSAGCHTQAGGLRRGGPRFS
Nucleotide Sequence CTGGGGCCGGTTTCACCCACGGGGTGGGCAGCAGGAGCACGGAGCGCGGGGTGCCACACACAGGCCGGGGGGCTCCGCAGAGGAGGCCCAAGGTTTTCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab