CircRNA Information

General Information
circRNA Basic Information
CircID chr11:126286930|126287185
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCATCCCACTGCCGCCTGCTTCCCTTGGCACAGCTCTTTCGTCTGCCTCAGACCTTCCTGCCTCCCTCTTGAAAGGATCTTTGTGGTTACATTAAACTCACCTGGGTAATCCAGGAATCCCTCCCCATCACAAGGTTCTTAATCACAGCTGCCGAATCCCCTTTTGCCACGGAAGGTAACATATTCTCAGTTCCGGGGATTAGGATGTGGGCCTCTTTGTGGGCCACTATTCTGTCTACCCCAGATAGTGATTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:126286930|126287185 hsa-miR-34a-5p 0 0 1
chr11:126286930|126287185 hsa-miR-34a-3p 0 0 1
chr11:126286930|126287185 hsa-miR-34b-5p 0 0 1
chr11:126286930|126287185 hsa-miR-34b-3p 0 0 1
chr11:126286930|126287185 hsa-miR-379-5p 0 0 1
chr11:126286930|126287185 hsa-miR-379-3p 0 0 1
chr11:126286930|126287185 hsa-miR-335-5p 0 0 1
chr11:126286930|126287185 hsa-miR-335-3p 0 0 1
chr11:126286930|126287185 hsa-miR-449a 0 0 1
chr11:126286930|126287185 hsa-miR-493-5p 0 0 1
chr11:126286930|126287185 hsa-miR-493-3p 0 0 1
chr11:126286930|126287185 hsa-miR-498-5p 0 0 1
chr11:126286930|126287185 hsa-miR-498-3p 0 0 1
chr11:126286930|126287185 hsa-miR-580-5p 0 0 1
chr11:126286930|126287185 hsa-miR-580-3p 0 0 1
chr11:126286930|126287185 hsa-miR-583 0 0 1
chr11:126286930|126287185 hsa-miR-637 0 0 1
chr11:126286930|126287185 hsa-miR-650 1 0 1
chr11:126286930|126287185 hsa-miR-449b-5p 0 0 1
chr11:126286930|126287185 hsa-miR-449b-3p 0 0 1
chr11:126286930|126287185 hsa-miR-939-5p 0 0 1
chr11:126286930|126287185 hsa-miR-939-3p 0 0 1
chr11:126286930|126287185 hsa-miR-940 0 0 1
chr11:126286930|126287185 hsa-miR-1227-5p 0 0 1
chr11:126286930|126287185 hsa-miR-1227-3p 0 0 1
chr11:126286930|126287185 hsa-miR-663b 0 0 1
chr11:126286930|126287185 hsa-miR-1276 0 0 1
chr11:126286930|126287185 hsa-miR-1321 0 0 1
chr11:126286930|126287185 hsa-miR-1827 0 0 1
chr11:126286930|126287185 hsa-miR-125a-3p 0 0 1
chr11:126286930|126287185 hsa-miR-501-5p 0 0 1
chr11:126286930|126287185 hsa-miR-34c-3p 0 0 1
chr11:126286930|126287185 hsa-miR-34c-5p 0 0 1
chr11:126286930|126287185 hsa-miR-548b-3p 0 0 1
chr11:126286930|126287185 hsa-miR-658 1 0 0
chr11:126286930|126287185 hsa-miR-762 1 0 0
chr11:126286930|126287185 hsa-miR-665 1 0 0
chr11:126286930|126287185 hsa-miR-1231 1 0 0
chr11:126286930|126287185 hsa-miR-1293 1 0 0
chr11:126286930|126287185 hsa-miR-3154 1 0 0
chr11:126286930|126287185 hsa-miR-3185 1 0 0
chr11:126286930|126287185 hsa-miR-3196 1 0 0
chr11:126286930|126287185 hsa-miR-4270 1 0 0
chr11:126286930|126287185 hsa-miR-4271 1 0 0
chr11:126286930|126287185 hsa-miR-3936 1 0 0
chr11:126286930|126287185 hsa-miR-4450 1 0 0
chr11:126286930|126287185 hsa-miR-4476 1 0 0
chr11:126286930|126287185 hsa-miR-4487 1 0 0
chr11:126286930|126287185 hsa-miR-4510 1 0 0
chr11:126286930|126287185 hsa-miR-4533 1 0 0
chr11:126286930|126287185 hsa-miR-4534 1 0 0
chr11:126286930|126287185 hsa-miR-4656 1 0 0
chr11:126286930|126287185 hsa-miR-4675 1 0 0
chr11:126286930|126287185 hsa-miR-4688 1 0 0
chr11:126286930|126287185 hsa-miR-4736 1 0 0
chr11:126286930|126287185 hsa-miR-4739 1 0 0
chr11:126286930|126287185 hsa-miR-4741 1 0 0
chr11:126286930|126287185 hsa-miR-5090 1 0 0
chr11:126286930|126287185 hsa-miR-5698 1 0 0
chr11:126286930|126287185 hsa-miR-5787 1 0 0
chr11:126286930|126287185 hsa-miR-6081 1 0 0
chr11:126286930|126287185 hsa-miR-6127 1 0 0
chr11:126286930|126287185 hsa-miR-6133 1 0 0
chr11:126286930|126287185 hsa-miR-6165 1 0 0
chr11:126286930|126287185 hsa-miR-7150 1 0 0
chr11:126286930|126287185 hsa-miR-8072 1 0 0
chr11:126286930|126287185 hsa-miR-12114 1 0 0
chr11:126286930|126287185 hsa-miR-12119 1 0 0
chr11:126286930|126287185 hsa-miR-6765-5p 1 0 0
chr11:126286930|126287185 hsa-miR-7106-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6825-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6799-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6089 1 0 0
chr11:126286930|126287185 hsa-miR-4695-5p 1 0 0
chr11:126286930|126287185 hsa-miR-4722-5p 1 0 0
chr11:126286930|126287185 hsa-miR-505-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6727-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6732-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6805-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6827-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6798-5p 1 0 0
chr11:126286930|126287185 hsa-miR-3126-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6760-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6874-5p 1 0 0
chr11:126286930|126287185 hsa-miR-5006-5p 1 0 0
chr11:126286930|126287185 hsa-miR-4640-5p 1 0 0
chr11:126286930|126287185 hsa-miR-885-3p 1 0 0
chr11:126286930|126287185 hsa-miR-4690-5p 1 0 0
chr11:126286930|126287185 hsa-miR-149-3p 1 0 0
chr11:126286930|126287185 hsa-miR-550b-2-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6781-5p 1 0 0
chr11:126286930|126287185 hsa-miR-4740-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6801-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6792-5p 1 0 0
chr11:126286930|126287185 hsa-miR-10400-5p 1 0 0
chr11:126286930|126287185 hsa-miR-1207-5p 1 0 0
chr11:126286930|126287185 hsa-miR-1233-5p 1 0 0
chr11:126286930|126287185 hsa-miR-1273h-5p 1 0 0
chr11:126286930|126287185 hsa-miR-4763-3p 1 0 0
chr11:126286930|126287185 hsa-miR-6778-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6870-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6893-5p 1 0 0
chr11:126286930|126287185 hsa-miR-1343-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6743-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6754-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6756-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6842-5p 1 0 0
chr11:126286930|126287185 hsa-miR-11181-3p 1 0 0
chr11:126286930|126287185 hsa-miR-1249-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6797-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6808-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6875-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6879-5p 1 0 0
chr11:126286930|126287185 hsa-miR-7111-5p 1 0 0
chr11:126286930|126287185 hsa-miR-4728-5p 1 0 0
chr11:126286930|126287185 hsa-miR-5196-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6780b-5p 1 0 0
chr11:126286930|126287185 hsa-miR-10526-3p 1 0 0
chr11:126286930|126287185 hsa-miR-328-5p 1 0 0
chr11:126286930|126287185 hsa-miR-4632-5p 1 0 0
chr11:126286930|126287185 hsa-miR-4725-3p 1 0 0
chr11:126286930|126287185 hsa-miR-6846-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6848-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6858-5p 1 0 0
chr11:126286930|126287185 hsa-miR-4436b-3p 1 0 0
chr11:126286930|126287185 hsa-miR-4723-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6885-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6511a-5p 1 0 0
chr11:126286930|126287185 hsa-miR-3679-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6876-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6891-5p 1 0 0
chr11:126286930|126287185 hsa-miR-6785-5p 1 0 0
chr11:126286930|126287185 hsa-miR-3619-5p 1 0 0
chr11:126286930|126287185 hsa-miR-514b-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:126286930|126287185
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence LHPTAACFPWHSSFVCLRPSCLPLERIFVVTLNSPG
Nucleotide Sequence CTGCATCCCACTGCCGCCTGCTTCCCTTGGCACAGCTCTTTCGTCTGCCTCAGACCTTCCTGCCTCCCTCTTGAAAGGATCTTTGTGGTTACATTAAACTCACCTGGGTAA
CircID chr11:126286930|126287185
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MPNPLLPRKVTYSQFRGLGCGPLCGPLFCLPQIVI
Nucleotide Sequence CTGCCGAATCCCCTTTTGCCACGGAAGGTAACATATTCTCAGTTCCGGGGATTAGGATGTGGGCCTCTTTGTGGGCCACTATTCTGTCTACCCCAGATAGTGATT
CircID chr11:126286930|126287185
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MPPASLGTALSSASDLPASLLKGSLWLH
Nucleotide Sequence CTGCCGCCTGCTTCCCTTGGCACAGCTCTTTCGTCTGCCTCAGACCTTCCTGCCTCCCTCTTGAAAGGATCTTTGTGGTTACATTAA
CircID chr11:126286930|126287185
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MGNPGIPPHHKVLNHSCRIPFCHGR
Nucleotide Sequence CTGGGTAATCCAGGAATCCCTCCCCATCACAAGGTTCTTAATCACAGCTGCCGAATCCCCTTTTGCCACGGAAGGTAA
CircID chr11:126286930|126287185
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MLPSVAKGDSAAVIKNLVMGRDSWITQVSLM
Nucleotide Sequence ATGTTACCTTCCGTGGCAAAAGGGGATTCGGCAGCTGTGATTAAGAACCTTGTGATGGGGAGGGATTCCTGGATTACCCAGGTGAGTTTAATGTAA
CircID chr11:126286930|126287185
ORF Type ORF6
Protein Length 38
Nucleotide Length 114
Protein Sequence MDYPGEFNVTTKILSRGRQEGLRQTKELCQGKQAAVGC
Nucleotide Sequence CTGGATTACCCAGGTGAGTTTAATGTAACCACAAAGATCCTTTCAAGAGGGAGGCAGGAAGGTCTGAGGCAGACGAAAGAGCTGTGCCAAGGGAAGCAGGCGGCAGTGGGATGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab