CircRNA Information

General Information
circRNA Basic Information
CircID chr11:130208429|130208676
Strand +
CircType exon
Host Gene ENSG00000149418.9;
Algorism CIRI2;
Sequence TGGGTGTGTCCCCAGCCCGTGACCCAGATGGCCTTGCCGGCAGGGAAGACATGGGAGGCGTCCGGCAGGCAGATGGGCCGCACCATGGAGCTGTACTCTGCCGGTTTCTCCAGCTCCAGCAGCGCGATGTCATAGTCGAAGGTGAAGTCATTGAAGAAGGGGTGGGAGATGATGCGCTTGAGCCTGCGCTCCTGCACCCCAGGGGCGCTGCGCTGGCTCTGGTCGTGCAAGCCCAGGAAGGCCGTCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:130208429|130208676 hsa-miR-150-5p 0 0 1
chr11:130208429|130208676 hsa-miR-150-3p 0 0 1
chr11:130208429|130208676 hsa-miR-184 0 0 1
chr11:130208429|130208676 hsa-miR-425-5p 0 0 1
chr11:130208429|130208676 hsa-miR-425-3p 0 0 1
chr11:130208429|130208676 hsa-miR-412-5p 0 0 1
chr11:130208429|130208676 hsa-miR-412-3p 0 0 1
chr11:130208429|130208676 hsa-miR-484 0 1 1
chr11:130208429|130208676 hsa-miR-489-5p 0 0 1
chr11:130208429|130208676 hsa-miR-489-3p 0 0 1
chr11:130208429|130208676 hsa-miR-608 0 0 1
chr11:130208429|130208676 hsa-miR-617 0 0 1
chr11:130208429|130208676 hsa-miR-675-5p 0 0 1
chr11:130208429|130208676 hsa-miR-675-3p 0 0 1
chr11:130208429|130208676 hsa-miR-1286 0 0 1
chr11:130208429|130208676 hsa-miR-1287-5p 0 0 1
chr11:130208429|130208676 hsa-miR-1287-3p 0 0 1
chr11:130208429|130208676 hsa-miR-1248 0 0 1
chr11:130208429|130208676 hsa-miR-1281 0 0 1
chr11:130208429|130208676 hsa-miR-532-3p 0 0 1
chr11:130208429|130208676 hsa-miR-1224-3p 0 0 1
chr11:130208429|130208676 hsa-miR-331-3p 0 0 1
chr11:130208429|130208676 hsa-miR-342-5p 0 0 1
chr11:130208429|130208676 hsa-miR-362-3p 0 0 1
chr11:130208429|130208676 hsa-miR-1260 0 0 1
chr11:130208429|130208676 hsa-miR-1274a 0 0 1
chr11:130208429|130208676 hsa-miR-1280 0 0 1
chr11:130208429|130208676 hsa-miR-329 0 0 1
chr11:130208429|130208676 hsa-miR-346 0 1 0
chr11:130208429|130208676 hsa-miR-596 0 1 0
chr11:130208429|130208676 hsa-miR-638 1 0 0
chr11:130208429|130208676 hsa-miR-762 0 1 0
chr11:130208429|130208676 hsa-miR-1203 0 1 0
chr11:130208429|130208676 hsa-miR-663b 1 0 0
chr11:130208429|130208676 hsa-miR-1260a 0 1 0
chr11:130208429|130208676 hsa-miR-3197 1 0 0
chr11:130208429|130208676 hsa-miR-378g 0 1 0
chr11:130208429|130208676 hsa-miR-3135b 0 1 0
chr11:130208429|130208676 hsa-miR-4466 0 1 0
chr11:130208429|130208676 hsa-miR-4492 0 1 0
chr11:130208429|130208676 hsa-miR-4498 0 1 0
chr11:130208429|130208676 hsa-miR-4734 1 0 0
chr11:130208429|130208676 hsa-miR-5572 0 1 0
chr11:130208429|130208676 hsa-miR-8089 0 1 0
chr11:130208429|130208676 hsa-miR-9899 1 0 0
chr11:130208429|130208676 hsa-miR-4731-5p 0 1 0
chr11:130208429|130208676 hsa-miR-3692-5p 0 1 0
chr11:130208429|130208676 hsa-miR-4722-5p 0 1 0
chr11:130208429|130208676 hsa-miR-3189-5p 1 0 0
chr11:130208429|130208676 hsa-miR-6874-5p 0 1 0
chr11:130208429|130208676 hsa-miR-6882-3p 1 0 0
chr11:130208429|130208676 hsa-miR-1343-3p 0 1 0
chr11:130208429|130208676 hsa-miR-6852-5p 0 1 0
chr11:130208429|130208676 hsa-miR-939-3p 0 1 0
chr11:130208429|130208676 hsa-miR-4763-5p 1 1 0
chr11:130208429|130208676 hsa-miR-6894-3p 0 1 0
chr11:130208429|130208676 hsa-miR-6753-5p 0 1 0
chr11:130208429|130208676 hsa-miR-4638-3p 1 0 0
chr11:130208429|130208676 hsa-miR-3619-3p 1 0 0
chr11:130208429|130208676 hsa-miR-6778-3p 0 1 0
chr11:130208429|130208676 hsa-miR-5088-3p 0 1 0
chr11:130208429|130208676 hsa-miR-2277-5p 1 1 0
chr11:130208429|130208676 hsa-miR-1298-3p 0 1 0
chr11:130208429|130208676 hsa-miR-4763-3p 1 0 0
chr11:130208429|130208676 hsa-miR-6812-5p 0 1 0
chr11:130208429|130208676 hsa-miR-5001-5p 0 1 0
chr11:130208429|130208676 hsa-miR-6819-5p 0 1 0
chr11:130208429|130208676 hsa-miR-3127-3p 1 1 0
chr11:130208429|130208676 hsa-miR-6836-5p 1 0 0
chr11:130208429|130208676 hsa-miR-1909-3p 1 0 0
chr11:130208429|130208676 hsa-miR-328-5p 1 0 0
chr11:130208429|130208676 hsa-miR-4745-3p 1 0 0
chr11:130208429|130208676 hsa-miR-6791-5p 0 1 0
chr11:130208429|130208676 hsa-miR-6893-3p 1 0 0
chr11:130208429|130208676 hsa-miR-6756-3p 0 1 0
chr11:130208429|130208676 hsa-miR-10392-3p 1 0 0
chr11:130208429|130208676 hsa-miR-6783-3p 0 1 0
chr11:130208429|130208676 hsa-miR-10525-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:130208429|130208676
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MALPAGKTWEASGRQMGRTMELYSAGFSSSSSAMS
Nucleotide Sequence ATGGCCTTGCCGGCAGGGAAGACATGGGAGGCGTCCGGCAGGCAGATGGGCCGCACCATGGAGCTGTACTCTGCCGGTTTCTCCAGCTCCAGCAGCGCGATGTCATAG
CircID chr11:130208429|130208676
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MKKGWEMMRLSLRSCTPGALRWLWSCKPRKAV
Nucleotide Sequence TTGAAGAAGGGGTGGGAGATGATGCGCTTGAGCCTGCGCTCCTGCACCCCAGGGGCGCTGCGCTGGCTCTGGTCGTGCAAGCCCAGGAAGGCCGTC
CircID chr11:130208429|130208676
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MGGVRQADGPHHGAVLCRFLQLQQRDVIVEGEVIEEGVGDDALEPALLHPRGAALALVVQAQEGRP
Nucleotide Sequence ATGGGAGGCGTCCGGCAGGCAGATGGGCCGCACCATGGAGCTGTACTCTGCCGGTTTCTCCAGCTCCAGCAGCGCGATGTCATAGTCGAAGGTGAAGTCATTGAAGAAGGGGTGGGAGATGATGCGCTTGAGCCTGCGCTCCTGCACCCCAGGGGCGCTGCGCTGGCTCTGGTCGTGCAAGCCCAGGAAGGCCGTCCA
CircID chr11:130208429|130208676
ORF Type ORF4
Protein Length 78
Nucleotide Length 234
Protein Sequence MGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHT
Nucleotide Sequence CTGGGCTTGCACGACCAGAGCCAGCGCAGCGCCCCTGGGGTGCAGGAGCGCAGGCTCAAGCGCATCATCTCCCACCCCTTCTTCAATGACTTCACCTTCGACTATGACATCGCGCTGCTGGAGCTGGAGAAACCGGCAGAGTACAGCTCCATGGTGCGGCCCATCTGCCTGCCGGACGCCTCCCATGTCTTCCCTGCCGGCAAGGCCATCTGGGTCACGGGCTGGGGACACACC
CircID chr11:130208429|130208676
ORF Type ORF5
Protein Length 67
Nucleotide Length 201
Protein Sequence MGCRSAGSSASSPTPSSMTSPSTMTSRCWSWRNRQSTAPWCGPSACRTPPMSSLPARPSGSRAGDTP
Nucleotide Sequence CTGGGGTGCAGGAGCGCAGGCTCAAGCGCATCATCTCCCACCCCTTCTTCAATGACTTCACCTTCGACTATGACATCGCGCTGCTGGAGCTGGAGAAACCGGCAGAGTACAGCTCCATGGTGCGGCCCATCTGCCTGCCGGACGCCTCCCATGTCTTCCCTGCCGGCAAGGCCATCTGGGTCACGGGCTGGGGACACACCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab