CircRNA Information

General Information
circRNA Basic Information
CircID chr11:130209497|130209850
Strand -
CircType exon
Host Gene ENSG00000149418.9;
Algorism CIRI2;
Sequence CTGCGAGAACCTCCTGCCGCAGCAGATCACGCCGCGCATGATGTGCGTGGGCTTCCTCAGCGGCGGCGTGGACTCCTGCCAGGTGGCCCCCGGGGCAGGAGGGCGGCAGGTGGGCCCCGGGAGAGGCGGGACTGGGGACTCACGGCAGGGCTTGTCTCCGCCCAGGGTGATTCCGGGGGACCCCTGTCCAGCGTGGAGGCGGATGGGCGGATCTTCCAGGCCGGTGTGGTGAGCTGGGGAGACGGCTGCGCTCAGAGGAACAAGCCAGGCGTGTACACAAGGCTCCCTCTGTTTCGGGACTGGATCAAAGAGAACACTGGGGTATAGGGGCCGGGGCCACCCAAATGTGTACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:130209497|130209850 hsa-miR-197-5p 0 0 1
chr11:130209497|130209850 hsa-miR-197-3p 0 0 1
chr11:130209497|130209850 hsa-miR-581 0 0 1
chr11:130209497|130209850 hsa-miR-640 0 0 1
chr11:130209497|130209850 hsa-miR-1234-3p 0 0 1
chr11:130209497|130209850 hsa-miR-663b 1 0 1
chr11:130209497|130209850 hsa-miR-1293 0 0 1
chr11:130209497|130209850 hsa-miR-1262 0 0 1
chr11:130209497|130209850 hsa-miR-1281 0 0 1
chr11:130209497|130209850 hsa-miR-1234 0 0 1
chr11:130209497|130209850 hsa-miR-671-5p 0 0 1
chr11:130209497|130209850 hsa-miR-615-5p 1 0 1
chr11:130209497|130209850 hsa-miR-199a-5p 0 0 1
chr11:130209497|130209850 hsa-miR-1289 0 0 1
chr11:130209497|130209850 hsa-miR-339-3p 0 0 1
chr11:130209497|130209850 hsa-miR-1224-3p 0 0 1
chr11:130209497|130209850 hsa-miR-199b-5p 0 0 1
chr11:130209497|130209850 hsa-miR-1207-5p 0 0 1
chr11:130209497|130209850 hsa-miR-324-3p 0 0 1
chr11:130209497|130209850 hsa-miR-220b 0 0 1
chr11:130209497|130209850 hsa-miR-7 0 0 1
chr11:130209497|130209850 hsa-miR-1254 0 0 1
chr11:130209497|130209850 hsa-miR-220a 0 0 1
chr11:130209497|130209850 hsa-miR-1826 0 0 1
chr11:130209497|130209850 hsa-miR-4479 1 0 0
chr11:130209497|130209850 hsa-miR-4682 1 0 0
chr11:130209497|130209850 hsa-miR-7974 1 0 0
chr11:130209497|130209850 hsa-miR-4731-5p 1 0 0
chr11:130209497|130209850 hsa-miR-139-3p 1 0 0
chr11:130209497|130209850 hsa-miR-7160-5p 1 0 0
chr11:130209497|130209850 hsa-miR-6882-3p 1 0 0
chr11:130209497|130209850 hsa-miR-1343-3p 1 0 0
chr11:130209497|130209850 hsa-miR-1226-5p 1 0 0
chr11:130209497|130209850 hsa-miR-6763-3p 1 0 0
chr11:130209497|130209850 hsa-miR-6757-3p 1 0 0
chr11:130209497|130209850 hsa-miR-652-5p 1 0 0
chr11:130209497|130209850 hsa-miR-4783-5p 1 0 0
chr11:130209497|130209850 hsa-miR-1910-5p 1 0 0
chr11:130209497|130209850 hsa-miR-4763-3p 1 0 0
chr11:130209497|130209850 hsa-miR-6858-5p 1 0 0
chr11:130209497|130209850 hsa-miR-6775-3p 1 0 0
chr11:130209497|130209850 hsa-miR-10392-3p 1 0 0
chr11:130209497|130209850 hsa-miR-6511b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:130209497|130209850
ORF Type ORF1
Protein Length 108
Nucleotide Length 327
Protein Sequence LREPPAAADHAAHDVRGLPQRRRGLLPGGPRGRRAAGGPRERRDWGLTAGLVSAQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTGV
Nucleotide Sequence CTGCGAGAACCTCCTGCCGCAGCAGATCACGCCGCGCATGATGTGCGTGGGCTTCCTCAGCGGCGGCGTGGACTCCTGCCAGGTGGCCCCCGGGGCAGGAGGGCGGCAGGTGGGCCCCGGGAGAGGCGGGACTGGGGACTCACGGCAGGGCTTGTCTCCGCCCAGGGTGATTCCGGGGGACCCCTGTCCAGCGTGGAGGCGGATGGGCGGATCTTCCAGGCCGGTGTGGTGAGCTGGGGAGACGGCTGCGCTCAGAGGAACAAGCCAGGCGTGTACACAAGGCTCCCTCTGTTTCGGGACTGGATCAAAGAGAACACTGGGGTATAG
CircID chr11:130209497|130209850
ORF Type ORF2
Protein Length 72
Nucleotide Length 219
Protein Sequence MPQQITPRMMCVGFLSGGVDSCQVAPGAGGRQVGPGRGGTGDSRQGLSPPRVIPGDPCPAWRRMGGSSRPVW
Nucleotide Sequence CTGCCGCAGCAGATCACGCCGCGCATGATGTGCGTGGGCTTCCTCAGCGGCGGCGTGGACTCCTGCCAGGTGGCCCCCGGGGCAGGAGGGCGGCAGGTGGGCCCCGGGAGAGGCGGGACTGGGGACTCACGGCAGGGCTTGTCTCCGCCCAGGGTGATTCCGGGGGACCCCTGTCCAGCGTGGAGGCGGATGGGCGGATCTTCCAGGCCGGTGTGGTGA
CircID chr11:130209497|130209850
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MGRRLRSEEQARRVHKAPSVSGLDQREHWGIGAGATQMCT
Nucleotide Sequence CTGGGGAGACGGCTGCGCTCAGAGGAACAAGCCAGGCGTGTACACAAGGCTCCCTCTGTTTCGGGACTGGATCAAAGAGAACACTGGGGTATAGGGGCCGGGGCCACCCAAATGTGTACA
CircID chr11:130209497|130209850
ORF Type ORF4
Protein Length 85
Nucleotide Length 255
Protein Sequence MSAAVSPAHHTGLEDPPIRLHAGQGSPGITLGGDKPCRESPVPPLPGPTCRPPAPGATWQESTPPLRKPTHIMRGVICCGRRFSQ
Nucleotide Sequence CTGAGCGCAGCCGTCTCCCCAGCTCACCACACCGGCCTGGAAGATCCGCCCATCCGCCTCCACGCTGGACAGGGGTCCCCCGGAATCACCCTGGGCGGAGACAAGCCCTGCCGTGAGTCCCCAGTCCCGCCTCTCCCGGGGCCCACCTGCCGCCCTCCTGCCCCGGGGGCCACCTGGCAGGAGTCCACGCCGCCGCTGAGGAAGCCCACGCACATCATGCGCGGCGTGATCTGCTGCGGCAGGAGGTTCTCGCAG
CircID chr11:130209497|130209850
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MGGPGPYTPVFSLIQSRNRGSLVYTPGLFL
Nucleotide Sequence TTGGGTGGCCCCGGCCCCTATACCCCAGTGTTCTCTTTGATCCAGTCCCGAAACAGAGGGAGCCTTGTGTACACGCCTGGCTTGTTCCTCTGA
CircID chr11:130209497|130209850
ORF Type ORF6
Protein Length 44
Nucleotide Length 135
Protein Sequence MDRGPPESPWAETSPAVSPQSRLSRGPPAALLPRGPPGRSPRRR
Nucleotide Sequence CTGGACAGGGGTCCCCCGGAATCACCCTGGGCGGAGACAAGCCCTGCCGTGAGTCCCCAGTCCCGCCTCTCCCGGGGCCCACCTGCCGCCCTCCTGCCCCGGGGGCCACCTGGCAGGAGTCCACGCCGCCGCTGA
CircID chr11:130209497|130209850
ORF Type ORF7
Protein Length 46
Nucleotide Length 141
Protein Sequence MCTRLACSSERSRLPSSPHRPGRSAHPPPRWTGVPRNHPGRRQALP
Nucleotide Sequence TTGTGTACACGCCTGGCTTGTTCCTCTGAGCGCAGCCGTCTCCCCAGCTCACCACACCGGCCTGGAAGATCCGCCCATCCGCCTCCACGCTGGACAGGGGTCCCCCGGAATCACCCTGGGCGGAGACAAGCCCTGCCGTGA
CircID chr11:130209497|130209850
ORF Type ORF8
Protein Length 36
Nucleotide Length 108
Protein Sequence MPPSCPGGHLAGVHAAAEEAHAHHARRDLLRQEVLA
Nucleotide Sequence CTGCCGCCCTCCTGCCCCGGGGGCCACCTGGCAGGAGTCCACGCCGCCGCTGAGGAAGCCCACGCACATCATGCGCGGCGTGATCTGCTGCGGCAGGAGGTTCTCGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab