CircRNA Information

General Information
circRNA Basic Information
CircID chr11:130210186|130210307
Strand +
CircType exon
Host Gene ENSG00000149418.9;
Algorism CIRI2;
Sequence CCTGGGAGCTGGTAAAACAATTTCAGTCTCAGACCCGTCTGTTTTCCAGGGTCCTCCGAGCCTGGGCTTCCTCAAGAGCGTGGCCCAAGGGCCCCACAGCCCAGATCCGGCAGCCCCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:130210186|130210307 hsa-miR-484 0 1 1
chr11:130210186|130210307 hsa-miR-526b-5p 0 0 1
chr11:130210186|130210307 hsa-miR-526b-3p 0 0 1
chr11:130210186|130210307 hsa-miR-504-5p 0 0 1
chr11:130210186|130210307 hsa-miR-504-3p 0 0 1
chr11:130210186|130210307 hsa-miR-570-5p 0 0 1
chr11:130210186|130210307 hsa-miR-570-3p 0 0 1
chr11:130210186|130210307 hsa-miR-612 0 0 1
chr11:130210186|130210307 hsa-miR-634 0 0 1
chr11:130210186|130210307 hsa-miR-635 0 0 1
chr11:130210186|130210307 hsa-miR-541-5p 0 0 1
chr11:130210186|130210307 hsa-miR-541-3p 0 0 1
chr11:130210186|130210307 hsa-miR-671-5p 1 1 1
chr11:130210186|130210307 hsa-miR-491-5p 0 0 1
chr11:130210186|130210307 hsa-miR-1224-5p 0 0 1
chr11:130210186|130210307 hsa-miR-654-5p 0 0 1
chr11:130210186|130210307 hsa-miR-483-5p 0 0 1
chr11:130210186|130210307 hsa-miR-875-3p 0 1 1
chr11:130210186|130210307 hsa-miR-1285 0 0 1
chr11:130210186|130210307 hsa-miR-611 1 0 0
chr11:130210186|130210307 hsa-miR-663a 1 0 0
chr11:130210186|130210307 hsa-miR-762 1 0 0
chr11:130210186|130210307 hsa-miR-760 1 0 0
chr11:130210186|130210307 hsa-miR-1291 1 0 0
chr11:130210186|130210307 hsa-miR-3196 1 0 0
chr11:130210186|130210307 hsa-miR-3197 1 0 0
chr11:130210186|130210307 hsa-miR-3621 1 0 0
chr11:130210186|130210307 hsa-miR-378g 0 1 0
chr11:130210186|130210307 hsa-miR-4656 1 0 0
chr11:130210186|130210307 hsa-miR-4741 1 0 0
chr11:130210186|130210307 hsa-miR-4751 0 1 0
chr11:130210186|130210307 hsa-miR-5194 1 0 0
chr11:130210186|130210307 hsa-miR-7974 0 1 0
chr11:130210186|130210307 hsa-miR-134-3p 0 1 0
chr11:130210186|130210307 hsa-miR-92a-2-5p 0 1 0
chr11:130210186|130210307 hsa-miR-7155-5p 1 0 0
chr11:130210186|130210307 hsa-miR-125b-1-3p 1 0 0
chr11:130210186|130210307 hsa-miR-6894-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6854-5p 0 1 0
chr11:130210186|130210307 hsa-miR-6742-5p 1 0 0
chr11:130210186|130210307 hsa-miR-3151-5p 1 1 0
chr11:130210186|130210307 hsa-miR-6796-5p 0 1 0
chr11:130210186|130210307 hsa-miR-6829-5p 1 1 0
chr11:130210186|130210307 hsa-miR-5008-5p 1 1 0
chr11:130210186|130210307 hsa-miR-615-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6786-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6749-5p 1 0 0
chr11:130210186|130210307 hsa-miR-7160-3p 1 0 0
chr11:130210186|130210307 hsa-miR-873-3p 1 1 0
chr11:130210186|130210307 hsa-miR-744-5p 1 0 0
chr11:130210186|130210307 hsa-miR-2681-5p 0 1 0
chr11:130210186|130210307 hsa-miR-6737-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6756-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6769a-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6803-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6813-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6774-5p 1 0 0
chr11:130210186|130210307 hsa-miR-3620-5p 1 1 0
chr11:130210186|130210307 hsa-miR-6836-5p 1 0 0
chr11:130210186|130210307 hsa-miR-10396b-5p 1 0 0
chr11:130210186|130210307 hsa-miR-4726-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6848-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6887-5p 1 0 0
chr11:130210186|130210307 hsa-miR-939-5p 0 1 0
chr11:130210186|130210307 hsa-miR-6724-5p 1 0 0
chr11:130210186|130210307 hsa-miR-6791-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:130210186|130210307
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence LGAGKTISVSDPSVFQGPPSLGFLKSVAQGPHSPDPAAPP
Nucleotide Sequence CTGGGAGCTGGTAAAACAATTTCAGTCTCAGACCCGTCTGTTTTCCAGGGTCCTCCGAGCCTGGGCTTCCTCAAGAGCGTGGCCCAAGGGCCCCACAGCCCAGATCCGGCAGCCCCACCA
CircID chr11:130210186|130210307
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MVKQFQSQTRLFSRVLRAWASSRAWPKGPTAQIRQPHH
Nucleotide Sequence CTGGTAAAACAATTTCAGTCTCAGACCCGTCTGTTTTCCAGGGTCCTCCGAGCCTGGGCTTCCTCAAGAGCGTGGCCCAAGGGCCCCACAGCCCAGATCCGGCAGCCCCACCAC
CircID chr11:130210186|130210307
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MWGPWATLLRKPRLGGPWKTDGSETEIVLPAPR
Nucleotide Sequence CTGTGGGGCCCTTGGGCCACGCTCTTGAGGAAGCCCAGGCTCGGAGGACCCTGGAAAACAGACGGGTCTGAGACTGAAATTGTTTTACCAGCTCCCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab