CircRNA Information

General Information
circRNA Basic Information
CircID chr11:14259674|14260724
Strand +
CircType exon
Host Gene ENSG00000262655.3;
Algorism CIRI2;
Sequence CTGCTCCAGATCCTCATTGCAGTCTCCAAGTTCTGCCAGAGACTTGAGCATCCGCTGTCGGGTTCGCATGCCCTTCCCGCAGGTCACGCTGCAGTCACTCCACTCGGACCATGGGGACAGCAAGCATGGGATGGTGTGGCACTCTGGCATCATGCACTTCTCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:14259674|14260724 hsa-miR-122-5p 0 0 1
chr11:14259674|14260724 hsa-miR-122-3p 0 0 1
chr11:14259674|14260724 hsa-miR-134-5p 0 0 1
chr11:14259674|14260724 hsa-miR-134-3p 0 0 1
chr11:14259674|14260724 hsa-miR-326 0 0 1
chr11:14259674|14260724 hsa-miR-432-5p 0 0 1
chr11:14259674|14260724 hsa-miR-432-3p 0 0 1
chr11:14259674|14260724 hsa-miR-593-5p 0 0 1
chr11:14259674|14260724 hsa-miR-593-3p 0 0 1
chr11:14259674|14260724 hsa-miR-620 0 0 1
chr11:14259674|14260724 hsa-miR-626 0 0 1
chr11:14259674|14260724 hsa-miR-631 0 0 1
chr11:14259674|14260724 hsa-miR-890 0 0 1
chr11:14259674|14260724 hsa-miR-1227-5p 0 0 1
chr11:14259674|14260724 hsa-miR-1227-3p 0 0 1
chr11:14259674|14260724 hsa-miR-1270 0 0 1
chr11:14259674|14260724 hsa-miR-1322 0 0 1
chr11:14259674|14260724 hsa-miR-1184 0 1 1
chr11:14259674|14260724 hsa-miR-330-5p 0 0 1
chr11:14259674|14260724 hsa-miR-509-3-5p 0 1 1
chr11:14259674|14260724 hsa-miR-509-5p 0 0 1
chr11:14259674|14260724 hsa-miR-519b-3p 0 1 1
chr11:14259674|14260724 hsa-miR-519c-3p 0 1 1
chr11:14259674|14260724 hsa-miR-516b 0 0 1
chr11:14259674|14260724 hsa-miR-519a 0 0 1
chr11:14259674|14260724 hsa-miR-1185 0 0 1
chr11:14259674|14260724 hsa-miR-636 1 1 0
chr11:14259674|14260724 hsa-miR-759 0 1 0
chr11:14259674|14260724 hsa-miR-1183 1 1 0
chr11:14259674|14260724 hsa-miR-4706 1 0 0
chr11:14259674|14260724 hsa-miR-4754 1 1 0
chr11:14259674|14260724 hsa-miR-6081 1 0 0
chr11:14259674|14260724 hsa-miR-8052 1 0 0
chr11:14259674|14260724 hsa-miR-8083 0 1 0
chr11:14259674|14260724 hsa-miR-8089 1 0 0
chr11:14259674|14260724 hsa-miR-11399 0 1 0
chr11:14259674|14260724 hsa-miR-12115 0 1 0
chr11:14259674|14260724 hsa-miR-139-3p 1 0 0
chr11:14259674|14260724 hsa-miR-4761-3p 0 1 0
chr11:14259674|14260724 hsa-miR-1288-3p 1 1 0
chr11:14259674|14260724 hsa-miR-1226-5p 1 0 0
chr11:14259674|14260724 hsa-miR-1909-5p 0 1 0
chr11:14259674|14260724 hsa-miR-7112-5p 1 0 0
chr11:14259674|14260724 hsa-miR-873-3p 0 1 0
chr11:14259674|14260724 hsa-miR-6868-5p 1 1 0
chr11:14259674|14260724 hsa-miR-7158-5p 1 0 0
chr11:14259674|14260724 hsa-miR-4716-5p 0 1 0
chr11:14259674|14260724 hsa-miR-6812-5p 1 0 0
chr11:14259674|14260724 hsa-miR-5196-5p 0 1 0
chr11:14259674|14260724 hsa-miR-4632-5p 1 0 0
chr11:14259674|14260724 hsa-miR-6511a-5p 1 0 0
chr11:14259674|14260724 hsa-miR-6856-5p 1 1 0
chr11:14259674|14260724 hsa-miR-6785-5p 1 0 0
chr11:14259674|14260724 hsa-miR-519a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:14259674|14260724
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence LLQILIAVSKFCQRLEHPLSGSHALPAGHAAVTPLGPWGQQAWDGVALWHHALLC
Nucleotide Sequence CTGCTCCAGATCCTCATTGCAGTCTCCAAGTTCTGCCAGAGACTTGAGCATCCGCTGTCGGGTTCGCATGCCCTTCCCGCAGGTCACGCTGCAGTCACTCCACTCGGACCATGGGGACAGCAAGCATGGGATGGTGTGGCACTCTGGCATCATGCACTTCTCTGC
CircID chr11:14259674|14260724
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MQSPSSARDLSIRCRVRMPFPQVTLQSLHSDHGDSKHGMVWHSGIMHFS
Nucleotide Sequence TTGCAGTCTCCAAGTTCTGCCAGAGACTTGAGCATCCGCTGTCGGGTTCGCATGCCCTTCCCGCAGGTCACGCTGCAGTCACTCCACTCGGACCATGGGGACAGCAAGCATGGGATGGTGTGGCACTCTGGCATCATGCACTTCTCT
CircID chr11:14259674|14260724
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MMPECHTIPCLLSPWSEWSDCSVTCGKGMRTRQRMLKSLAELGDCNEDLEQ
Nucleotide Sequence ATGATGCCAGAGTGCCACACCATCCCATGCTTGCTGTCCCCATGGTCCGAGTGGAGTGACTGCAGCGTGACCTGCGGGAAGGGCATGCGAACCCGACAGCGGATGCTCAAGTCTCTGGCAGAACTTGGAGACTGCAATGAGGATCTGGAGCAG
CircID chr11:14259674|14260724
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MQRDLREGHANPTADAQVSGRTWRLQ
Nucleotide Sequence CTGCAGCGTGACCTGCGGGAAGGGCATGCGAACCCGACAGCGGATGCTCAAGTCTCTGGCAGAACTTGGAGACTGCAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab