CircRNA Information

General Information
circRNA Basic Information
CircID chr11:1753304|1753419
Strand +
CircType exon
Host Gene ENSG00000117984.11;
Algorism CIRI2;
Sequence ACACCCACACACTCGCCCGCCCACTGTCCTGGGCGCCCTGGAAGCCGGCGGCCCAAGCCCGACTTGCTGTTTTGTTCTGTGGTTTTCCCCTCCCTGGGTTCAGAAATGCTGCCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:1753304|1753419 hsa-miR-107 0 0 1
chr11:1753304|1753419 hsa-miR-609 0 0 1
chr11:1753304|1753419 hsa-miR-635 0 0 1
chr11:1753304|1753419 hsa-miR-1321 0 1 1
chr11:1753304|1753419 hsa-miR-574-5p 0 1 1
chr11:1753304|1753419 hsa-miR-140-3p 0 1 1
chr11:1753304|1753419 hsa-miR-103 0 0 1
chr11:1753304|1753419 hsa-miR-644 0 0 1
chr11:1753304|1753419 hsa-miR-147 0 0 1
chr11:1753304|1753419 hsa-miR-762 1 0 0
chr11:1753304|1753419 hsa-miR-2110 1 0 0
chr11:1753304|1753419 hsa-miR-711 1 1 0
chr11:1753304|1753419 hsa-miR-2861 1 0 0
chr11:1753304|1753419 hsa-miR-3141 1 0 0
chr11:1753304|1753419 hsa-miR-4259 1 0 0
chr11:1753304|1753419 hsa-miR-4436a 0 1 0
chr11:1753304|1753419 hsa-miR-4441 0 1 0
chr11:1753304|1753419 hsa-miR-4514 0 1 0
chr11:1753304|1753419 hsa-miR-4651 1 0 0
chr11:1753304|1753419 hsa-miR-4674 1 0 0
chr11:1753304|1753419 hsa-miR-4706 1 0 0
chr11:1753304|1753419 hsa-miR-4739 1 1 0
chr11:1753304|1753419 hsa-miR-4785 1 0 0
chr11:1753304|1753419 hsa-miR-5787 1 0 0
chr11:1753304|1753419 hsa-miR-6069 1 0 0
chr11:1753304|1753419 hsa-miR-6840-3p 1 1 0
chr11:1753304|1753419 hsa-miR-7106-5p 1 0 0
chr11:1753304|1753419 hsa-miR-3663-3p 1 0 0
chr11:1753304|1753419 hsa-miR-6759-5p 1 0 0
chr11:1753304|1753419 hsa-miR-4655-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6768-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6748-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6805-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6798-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6782-5p 1 0 0
chr11:1753304|1753419 hsa-miR-3944-3p 1 1 0
chr11:1753304|1753419 hsa-miR-1908-3p 1 0 0
chr11:1753304|1753419 hsa-miR-6753-5p 1 0 0
chr11:1753304|1753419 hsa-miR-1228-5p 1 1 0
chr11:1753304|1753419 hsa-miR-6771-5p 1 0 0
chr11:1753304|1753419 hsa-miR-92b-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6749-5p 1 0 0
chr11:1753304|1753419 hsa-miR-149-3p 1 0 0
chr11:1753304|1753419 hsa-miR-423-5p 1 0 0
chr11:1753304|1753419 hsa-miR-2115-5p 0 1 0
chr11:1753304|1753419 hsa-miR-589-3p 1 0 0
chr11:1753304|1753419 hsa-miR-4763-3p 1 0 0
chr11:1753304|1753419 hsa-miR-6787-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6756-5p 1 0 0
chr11:1753304|1753419 hsa-miR-1249-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6779-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6780a-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6797-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6808-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6879-5p 1 0 0
chr11:1753304|1753419 hsa-miR-7111-5p 1 0 0
chr11:1753304|1753419 hsa-miR-1915-3p 1 1 0
chr11:1753304|1753419 hsa-miR-3620-5p 1 0 0
chr11:1753304|1753419 hsa-miR-4728-5p 1 1 0
chr11:1753304|1753419 hsa-miR-5196-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6780b-5p 1 0 0
chr11:1753304|1753419 hsa-miR-328-5p 1 0 0
chr11:1753304|1753419 hsa-miR-4632-5p 1 0 0
chr11:1753304|1753419 hsa-miR-4649-5p 0 1 0
chr11:1753304|1753419 hsa-miR-4685-5p 1 0 0
chr11:1753304|1753419 hsa-miR-4725-3p 1 0 0
chr11:1753304|1753419 hsa-miR-4745-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6738-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6795-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6885-5p 1 0 0
chr11:1753304|1753419 hsa-miR-1266-5p 1 0 0
chr11:1753304|1753419 hsa-miR-6739-5p 0 1 0
chr11:1753304|1753419 hsa-miR-6785-5p 1 1 0
chr11:1753304|1753419 hsa-miR-6837-5p 0 1 0
chr11:1753304|1753419 hsa-miR-7157-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:1753304|1753419
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MGALEAGGPSPTCCFVLWFSPPWVQKCCL
Nucleotide Sequence CTGGGCGCCCTGGAAGCCGGCGGCCCAAGCCCGACTTGCTGTTTTGTTCTGTGGTTTTCCCCTCCCTGGGTTCAGAAATGCTGCCTG
CircID chr11:1753304|1753419
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MSWAPWKPAAQARLAVLFCGFPLPGFRNAAC
Nucleotide Sequence CTGTCCTGGGCGCCCTGGAAGCCGGCGGCCCAAGCCCGACTTGCTGTTTTGTTCTGTGGTTTTCCCCTCCCTGGGTTCAGAAATGCTGCCTGC
CircID chr11:1753304|1753419
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MNPGRGKPQNKTASRAWAAGFQGAQDSGRASVWV
Nucleotide Sequence CTGAACCCAGGGAGGGGAAAACCACAGAACAAAACAGCAAGTCGGGCTTGGGCCGCCGGCTTCCAGGGCGCCCAGGACAGTGGGCGGGCGAGTGTGTGGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab