CircRNA Information

General Information
circRNA Basic Information
CircID chr11:18089485|18090489
Strand -
CircType exon
Host Gene ENSG00000166788.8;
Algorism CIRI2;
Sequence CTCCCCCACCTTCACCAGCAAGTCAACATTTGTTGAACTTGACATAATGAAGCAAATGCTATCATAAATAGCTGGATGTTCCTGGATCCTTTCAACCCAAACACTGGCCACTTCTGCCTGGGAAAGGCAAGTAAGCAACAACCTACATGGTAAACGTGGGTTGAATTTCTACTTTTCAAAAAAAAAAAAAAAACAGTAAAGGAAATTCGAAAATAAAAAATTAACTTTTTTTTCTTATCTACTCTTATGAGTAACCTTATAGAATTCATAAAAGGAAAAGCATACCTGCTTGTTTCCAGCAGAGTAGGTGGGTCTGAATCATACAAACAGTGCAATAACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:18089485|18090489 hsa-miR-25-5p 0 0 1
chr11:18089485|18090489 hsa-miR-25-3p 0 0 1
chr11:18089485|18090489 hsa-miR-32-5p 0 0 1
chr11:18089485|18090489 hsa-miR-32-3p 0 0 1
chr11:18089485|18090489 hsa-miR-137-5p 0 0 1
chr11:18089485|18090489 hsa-miR-137-3p 0 0 1
chr11:18089485|18090489 hsa-miR-363-5p 0 0 1
chr11:18089485|18090489 hsa-miR-363-3p 0 0 1
chr11:18089485|18090489 hsa-miR-367-5p 0 0 1
chr11:18089485|18090489 hsa-miR-367-3p 0 0 1
chr11:18089485|18090489 hsa-miR-452-5p 0 0 1
chr11:18089485|18090489 hsa-miR-452-3p 0 0 1
chr11:18089485|18090489 hsa-miR-488-5p 0 0 1
chr11:18089485|18090489 hsa-miR-488-3p 0 0 1
chr11:18089485|18090489 hsa-miR-493-5p 0 0 1
chr11:18089485|18090489 hsa-miR-493-3p 0 0 1
chr11:18089485|18090489 hsa-miR-92b-5p 0 0 1
chr11:18089485|18090489 hsa-miR-92b-3p 0 0 1
chr11:18089485|18090489 hsa-miR-577 0 0 1
chr11:18089485|18090489 hsa-miR-625-5p 0 0 1
chr11:18089485|18090489 hsa-miR-625-3p 0 0 1
chr11:18089485|18090489 hsa-miR-662 0 0 1
chr11:18089485|18090489 hsa-miR-421 0 0 1
chr11:18089485|18090489 hsa-miR-298 0 0 1
chr11:18089485|18090489 hsa-miR-665 0 0 1
chr11:18089485|18090489 hsa-miR-873-5p 0 0 1
chr11:18089485|18090489 hsa-miR-873-3p 0 0 1
chr11:18089485|18090489 hsa-miR-297 0 0 1
chr11:18089485|18090489 hsa-miR-1179 0 0 1
chr11:18089485|18090489 hsa-miR-1208 0 0 1
chr11:18089485|18090489 hsa-miR-1287-5p 0 0 1
chr11:18089485|18090489 hsa-miR-1287-3p 0 0 1
chr11:18089485|18090489 hsa-miR-548n 0 0 1
chr11:18089485|18090489 hsa-miR-1275 0 0 1
chr11:18089485|18090489 hsa-miR-129-5p 0 0 1
chr11:18089485|18090489 hsa-miR-199a-5p 0 0 1
chr11:18089485|18090489 hsa-miR-1224-3p 0 1 1
chr11:18089485|18090489 hsa-miR-875-3p 0 1 1
chr11:18089485|18090489 hsa-miR-409-3p 0 0 1
chr11:18089485|18090489 hsa-miR-199b-5p 0 0 1
chr11:18089485|18090489 hsa-miR-590-3p 0 0 1
chr11:18089485|18090489 hsa-miR-138 0 0 1
chr11:18089485|18090489 hsa-miR-92a 0 0 1
chr11:18089485|18090489 hsa-miR-599 0 1 0
chr11:18089485|18090489 hsa-miR-4476 1 0 0
chr11:18089485|18090489 hsa-miR-4514 0 1 0
chr11:18089485|18090489 hsa-miR-4673 1 1 0
chr11:18089485|18090489 hsa-miR-4692 0 1 0
chr11:18089485|18090489 hsa-miR-1247-3p 1 0 0
chr11:18089485|18090489 hsa-miR-3692-5p 0 1 0
chr11:18089485|18090489 hsa-miR-6089 1 0 0
chr11:18089485|18090489 hsa-miR-4722-5p 1 0 0
chr11:18089485|18090489 hsa-miR-3677-5p 0 1 0
chr11:18089485|18090489 hsa-miR-1915-5p 1 0 0
chr11:18089485|18090489 hsa-miR-6798-5p 1 0 0
chr11:18089485|18090489 hsa-miR-4793-3p 1 0 0
chr11:18089485|18090489 hsa-miR-6740-5p 0 1 0
chr11:18089485|18090489 hsa-miR-3065-5p 0 1 0
chr11:18089485|18090489 hsa-miR-6499-3p 1 0 0
chr11:18089485|18090489 hsa-miR-4661-3p 0 1 0
chr11:18089485|18090489 hsa-miR-24-2-5p 0 1 0
chr11:18089485|18090489 hsa-miR-1180-5p 0 1 0
chr11:18089485|18090489 hsa-miR-106b-3p 1 0 0
chr11:18089485|18090489 hsa-miR-4795-5p 0 1 0
chr11:18089485|18090489 hsa-miR-5587-3p 1 0 0
chr11:18089485|18090489 hsa-miR-6812-5p 1 0 0
chr11:18089485|18090489 hsa-miR-1910-3p 0 1 0
chr11:18089485|18090489 hsa-miR-6511a-5p 1 1 0
chr11:18089485|18090489 hsa-miR-6511b-5p 1 0 0
chr11:18089485|18090489 hsa-miR-7114-3p 0 1 0
chr11:18089485|18090489 hsa-miR-200c-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:18089485|18090489
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MFLDPFNPNTGHFCLGKASKQQPTW
Nucleotide Sequence ATGTTCCTGGATCCTTTCAACCCAAACACTGGCCACTTCTGCCTGGGAAAGGCAAGTAAGCAACAACCTACATGGTAA
CircID chr11:18089485|18090489
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MSNLIEFIKGKAYLLVSSRVGGSESYKQCNN
Nucleotide Sequence ATGAGTAACCTTATAGAATTCATAAAAGGAAAAGCATACCTGCTTGTTTCCAGCAGAGTAGGTGGGTCTGAATCATACAAACAGTGCAATAAC
CircID chr11:18089485|18090489
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MATSAWERQVSNNLHGKRGLNFYFSKKKKKQ
Nucleotide Sequence CTGGCCACTTCTGCCTGGGAAAGGCAAGTAAGCAACAACCTACATGGTAAACGTGGGTTGAATTTCTACTTTTCAAAAAAAAAAAAAAAACAGTAA
CircID chr11:18089485|18090489
ORF Type ORF4
Protein Length 107
Nucleotide Length 324
Protein Sequence MHCLYDSDPPTLLETSRYAFPFMNSIRLLIRVDKKKKLIFYFRISFTVFFFFLKSRNSTHVYHVGCCLLAFPRQKWPVFGLKGSRNIQLFMIAFASLCQVQQMLTCW
Nucleotide Sequence TTGCACTGTTTGTATGATTCAGACCCACCTACTCTGCTGGAAACAAGCAGGTATGCTTTTCCTTTTATGAATTCTATAAGGTTACTCATAAGAGTAGATAAGAAAAAAAAGTTAATTTTTTATTTTCGAATTTCCTTTACTGTTTTTTTTTTTTTTTTGAAAAGTAGAAATTCAACCCACGTTTACCATGTAGGTTGTTGCTTACTTGCCTTTCCCAGGCAGAAGTGGCCAGTGTTTGGGTTGAAAGGATCCAGGAACATCCAGCTATTTATGATAGCATTTGCTTCATTATGTCAAGTTCAACAAATGTTGACTTGCTGGTGA
CircID chr11:18089485|18090489
ORF Type ORF5
Protein Length 47
Nucleotide Length 141
Protein Sequence MLLTCLSQAEVASVWVERIQEHPAIYDSICFIMSSSTNVDLLVKVGE
Nucleotide Sequence TTGTTGCTTACTTGCCTTTCCCAGGCAGAAGTGGCCAGTGTTTGGGTTGAAAGGATCCAGGAACATCCAGCTATTTATGATAGCATTTGCTTCATTATGTCAAGTTCAACAAATGTTGACTTGCTGGTGAAGGTGGGGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab