CircRNA Information

General Information
circRNA Basic Information
CircID chr11:18269763|18269928
Strand +
CircType exon
Host Gene ENSG00000173432.9;
Algorism CIRI2;
Sequence CCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGATTGGGGTCTTTGCCACTCCTGCCCCATTCATTGGCAGCCTGATCAGCCAGCGAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:18269763|18269928 hsa-miR-200b-5p 0 0 1
chr11:18269763|18269928 hsa-miR-200b-3p 0 0 1
chr11:18269763|18269928 hsa-miR-149-5p 0 0 1
chr11:18269763|18269928 hsa-miR-149-3p 0 0 1
chr11:18269763|18269928 hsa-miR-200c-5p 0 0 1
chr11:18269763|18269928 hsa-miR-200c-3p 0 0 1
chr11:18269763|18269928 hsa-miR-34b-5p 0 0 1
chr11:18269763|18269928 hsa-miR-34b-3p 0 0 1
chr11:18269763|18269928 hsa-miR-370-5p 0 0 1
chr11:18269763|18269928 hsa-miR-370-3p 0 0 1
chr11:18269763|18269928 hsa-miR-383-5p 0 0 1
chr11:18269763|18269928 hsa-miR-383-3p 0 0 1
chr11:18269763|18269928 hsa-miR-429 0 0 1
chr11:18269763|18269928 hsa-miR-412-5p 0 0 1
chr11:18269763|18269928 hsa-miR-412-3p 0 0 1
chr11:18269763|18269928 hsa-miR-484 0 0 1
chr11:18269763|18269928 hsa-miR-539-5p 0 0 1
chr11:18269763|18269928 hsa-miR-539-3p 0 0 1
chr11:18269763|18269928 hsa-miR-1294 0 0 1
chr11:18269763|18269928 hsa-miR-1266-5p 0 0 1
chr11:18269763|18269928 hsa-miR-1266-3p 0 0 1
chr11:18269763|18269928 hsa-miR-486-3p 0 0 1
chr11:18269763|18269928 hsa-miR-767-3p 0 0 1
chr11:18269763|18269928 hsa-miR-524-5p 0 0 1
chr11:18269763|18269928 hsa-miR-1207-5p 1 1 1
chr11:18269763|18269928 hsa-miR-516a-3p 0 0 1
chr11:18269763|18269928 hsa-miR-520d-5p 0 0 1
chr11:18269763|18269928 hsa-miR-720 0 0 1
chr11:18269763|18269928 hsa-miR-1201 0 0 1
chr11:18269763|18269928 hsa-miR-612 1 0 0
chr11:18269763|18269928 hsa-miR-663a 1 0 0
chr11:18269763|18269928 hsa-miR-762 1 0 0
chr11:18269763|18269928 hsa-miR-1200 0 1 0
chr11:18269763|18269928 hsa-miR-1268a 1 0 0
chr11:18269763|18269928 hsa-miR-3132 1 0 0
chr11:18269763|18269928 hsa-miR-3141 1 0 0
chr11:18269763|18269928 hsa-miR-548u 0 1 0
chr11:18269763|18269928 hsa-miR-4270 1 0 0
chr11:18269763|18269928 hsa-miR-548z 0 1 0
chr11:18269763|18269928 hsa-miR-1268b 1 0 0
chr11:18269763|18269928 hsa-miR-4686 0 1 0
chr11:18269763|18269928 hsa-miR-4689 1 0 0
chr11:18269763|18269928 hsa-miR-4705 0 1 0
chr11:18269763|18269928 hsa-miR-4706 1 1 0
chr11:18269763|18269928 hsa-miR-5090 1 0 0
chr11:18269763|18269928 hsa-miR-6860 1 0 0
chr11:18269763|18269928 hsa-miR-7150 1 0 0
chr11:18269763|18269928 hsa-miR-7974 1 1 0
chr11:18269763|18269928 hsa-miR-12128 1 0 0
chr11:18269763|18269928 hsa-miR-3194-3p 1 0 0
chr11:18269763|18269928 hsa-miR-4433a-3p 0 1 0
chr11:18269763|18269928 hsa-miR-4687-3p 1 0 0
chr11:18269763|18269928 hsa-miR-3692-5p 0 1 0
chr11:18269763|18269928 hsa-miR-4768-3p 0 1 0
chr11:18269763|18269928 hsa-miR-6089 1 0 0
chr11:18269763|18269928 hsa-miR-6757-5p 1 0 0
chr11:18269763|18269928 hsa-miR-4722-5p 0 1 0
chr11:18269763|18269928 hsa-miR-3064-5p 0 1 0
chr11:18269763|18269928 hsa-miR-6727-5p 1 0 0
chr11:18269763|18269928 hsa-miR-6721-5p 1 1 0
chr11:18269763|18269928 hsa-miR-197-5p 1 0 0
chr11:18269763|18269928 hsa-miR-3180-3p 1 0 0
chr11:18269763|18269928 hsa-miR-877-3p 0 1 0
chr11:18269763|18269928 hsa-miR-6829-5p 1 0 0
chr11:18269763|18269928 hsa-miR-6728-3p 0 1 0
chr11:18269763|18269928 hsa-miR-5008-5p 1 1 0
chr11:18269763|18269928 hsa-miR-6786-5p 1 0 0
chr11:18269763|18269928 hsa-miR-1226-5p 1 0 0
chr11:18269763|18269928 hsa-miR-4793-5p 1 0 0
chr11:18269763|18269928 hsa-miR-1229-5p 1 0 0
chr11:18269763|18269928 hsa-miR-4640-5p 1 0 0
chr11:18269763|18269928 hsa-miR-1908-5p 1 0 0
chr11:18269763|18269928 hsa-miR-1228-5p 1 0 0
chr11:18269763|18269928 hsa-miR-3158-3p 1 0 0
chr11:18269763|18269928 hsa-miR-6828-3p 0 1 0
chr11:18269763|18269928 hsa-miR-6837-3p 0 1 0
chr11:18269763|18269928 hsa-miR-6857-3p 1 1 0
chr11:18269763|18269928 hsa-miR-3688-5p 0 1 0
chr11:18269763|18269928 hsa-miR-6839-3p 0 1 0
chr11:18269763|18269928 hsa-miR-4763-3p 1 1 0
chr11:18269763|18269928 hsa-miR-6787-5p 1 0 0
chr11:18269763|18269928 hsa-miR-6775-5p 1 1 0
chr11:18269763|18269928 hsa-miR-6743-5p 1 0 0
chr11:18269763|18269928 hsa-miR-6754-5p 1 0 0
chr11:18269763|18269928 hsa-miR-6756-5p 0 1 0
chr11:18269763|18269928 hsa-miR-6722-3p 1 0 0
chr11:18269763|18269928 hsa-miR-6808-5p 1 0 0
chr11:18269763|18269928 hsa-miR-6879-5p 1 1 0
chr11:18269763|18269928 hsa-miR-5196-5p 1 0 0
chr11:18269763|18269928 hsa-miR-10396a-5p 1 0 0
chr11:18269763|18269928 hsa-miR-10396b-5p 1 0 0
chr11:18269763|18269928 hsa-miR-328-5p 1 0 0
chr11:18269763|18269928 hsa-miR-4632-5p 1 0 0
chr11:18269763|18269928 hsa-miR-4749-5p 0 1 0
chr11:18269763|18269928 hsa-miR-6729-5p 1 0 0
chr11:18269763|18269928 hsa-miR-6735-5p 0 1 0
chr11:18269763|18269928 hsa-miR-6738-5p 1 0 0
chr11:18269763|18269928 hsa-miR-6794-5p 1 0 0
chr11:18269763|18269928 hsa-miR-4436b-3p 1 1 0
chr11:18269763|18269928 hsa-miR-939-5p 1 0 0
chr11:18269763|18269928 hsa-miR-1238-5p 0 1 0
chr11:18269763|18269928 hsa-miR-4758-5p 0 1 0
chr11:18269763|18269928 hsa-miR-6893-3p 0 1 0
chr11:18269763|18269928 hsa-miR-3085-3p 0 1 0
chr11:18269763|18269928 hsa-miR-6783-3p 1 0 0
chr11:18269763|18269928 hsa-miR-6504-5p 0 1 0
chr11:18269763|18269928 hsa-miR-7156-5p 0 1 0
chr11:18269763|18269928 hsa-miR-548h-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:18269763|18269928
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MYPCPEGLTARSPESRVKRKLSISQAGQQVGSDWGLCHSCPIHWQPDQPAS
Nucleotide Sequence TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGATTGGGGTCTTTGCCACTCCTGCCCCATTCATTGGCAGCCTGATCAGCCAGCGAGT
CircID chr11:18269763|18269928
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MADQAANEWGRSGKDPNHFRPAGLPEKY
Nucleotide Sequence CTGGCTGATCAGGCTGCCAATGAATGGGGCAGGAGTGGCAAAGACCCCAATCACTTCCGACCTGCTGGCCTGCCTGAGAAATACTGA
CircID chr11:18269763|18269928
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MIRLPMNGAGVAKTPITSDLLACLRNTELPLHSALRRSGCEALRAGIQSGER
Nucleotide Sequence CTGATCAGGCTGCCAATGAATGGGGCAGGAGTGGCAAAGACCCCAATCACTTCCGACCTGCTGGCCTGCCTGAGAAATACTGAGCTTCCTCTTCACTCTGCTCTCAGGAGATCTGGCTGTGAGGCCCTCAGGGCAGGGATACAAAGCGGGGAGAGG
CircID chr11:18269763|18269928
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MSFLFTLLSGDLAVRPSGQGYKAGR
Nucleotide Sequence CTGAGCTTCCTCTTCACTCTGCTCTCAGGAGATCTGGCTGTGAGGCCCTCAGGGCAGGGATACAAAGCGGGGAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab