CircRNA Information

General Information
circRNA Basic Information
CircID chr11:1840558|1840908
Strand +
CircType exon
Host Gene ENSG00000130598.14;
Algorism CIRI2;
Sequence CTCCTTGCTGGTCTTCTGCACCCTCACCTCCATGTCGTACTTCTCCTCTTCAGCCGCATCGATCTTGGCGTGCAGCTGTTTGCAGAGCTCCTAGGGGTGGGTGTGGGGGCGGGCGGCCGTCCTGACACTTGGCAGCCACGGTCACCTGCCCCTGCCCTGACCACCCCACTGGCCCTCTTGACAAGTGGGGAAACTGAGTTAGCAGGCAGGCCTGCTGCTGGGGAGGCGGGGTGGCCGGGGAGGGGCTGGTACCTGCACTTCAGACATGGAGCCCGGGATATGCAGCGGCGGGCAGTGCTCCGCCAGGTAGTTCTGCTTCTCTGCCTCACGGCGGCTCTCCTCCTTCTCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:1840558|1840908 hsa-miR-15a-5p 0 0 1
chr11:1840558|1840908 hsa-miR-15a-3p 0 0 1
chr11:1840558|1840908 hsa-miR-214-5p 0 0 1
chr11:1840558|1840908 hsa-miR-214-3p 0 0 1
chr11:1840558|1840908 hsa-miR-15b-5p 0 0 1
chr11:1840558|1840908 hsa-miR-15b-3p 0 0 1
chr11:1840558|1840908 hsa-miR-195-5p 0 0 1
chr11:1840558|1840908 hsa-miR-195-3p 0 0 1
chr11:1840558|1840908 hsa-miR-335-5p 0 0 1
chr11:1840558|1840908 hsa-miR-335-3p 0 0 1
chr11:1840558|1840908 hsa-miR-424-5p 0 0 1
chr11:1840558|1840908 hsa-miR-424-3p 0 0 1
chr11:1840558|1840908 hsa-miR-448 0 0 1
chr11:1840558|1840908 hsa-miR-497-5p 0 0 1
chr11:1840558|1840908 hsa-miR-497-3p 0 0 1
chr11:1840558|1840908 hsa-miR-573 0 0 1
chr11:1840558|1840908 hsa-miR-604 0 0 1
chr11:1840558|1840908 hsa-miR-608 0 0 1
chr11:1840558|1840908 hsa-miR-619-5p 0 0 1
chr11:1840558|1840908 hsa-miR-619-3p 0 0 1
chr11:1840558|1840908 hsa-miR-634 0 0 1
chr11:1840558|1840908 hsa-miR-647 0 0 1
chr11:1840558|1840908 hsa-miR-657 0 0 1
chr11:1840558|1840908 hsa-miR-765 1 0 1
chr11:1840558|1840908 hsa-miR-298 0 0 1
chr11:1840558|1840908 hsa-miR-708-5p 0 0 1
chr11:1840558|1840908 hsa-miR-708-3p 0 0 1
chr11:1840558|1840908 hsa-miR-1293 0 0 1
chr11:1840558|1840908 hsa-miR-1281 0 0 1
chr11:1840558|1840908 hsa-miR-1827 0 0 1
chr11:1840558|1840908 hsa-miR-125a-3p 0 0 1
chr11:1840558|1840908 hsa-miR-486-3p 0 0 1
chr11:1840558|1840908 hsa-miR-28-5p 0 0 1
chr11:1840558|1840908 hsa-miR-654-3p 0 0 1
chr11:1840558|1840908 hsa-miR-1207-5p 1 0 1
chr11:1840558|1840908 hsa-miR-342-5p 0 0 1
chr11:1840558|1840908 hsa-miR-519b-3p 0 0 1
chr11:1840558|1840908 hsa-miR-519c-3p 0 0 1
chr11:1840558|1840908 hsa-miR-323-5p 0 0 1
chr11:1840558|1840908 hsa-miR-16 0 0 1
chr11:1840558|1840908 hsa-miR-519a 0 0 1
chr11:1840558|1840908 hsa-miR-639 1 0 0
chr11:1840558|1840908 hsa-miR-663a 1 0 0
chr11:1840558|1840908 hsa-miR-1538 1 0 0
chr11:1840558|1840908 hsa-miR-3154 1 0 0
chr11:1840558|1840908 hsa-miR-4466 1 0 0
chr11:1840558|1840908 hsa-miR-4533 1 0 0
chr11:1840558|1840908 hsa-miR-4656 1 0 0
chr11:1840558|1840908 hsa-miR-4688 1 0 0
chr11:1840558|1840908 hsa-miR-4689 1 0 0
chr11:1840558|1840908 hsa-miR-4739 1 0 0
chr11:1840558|1840908 hsa-miR-6081 1 0 0
chr11:1840558|1840908 hsa-miR-8085 1 0 0
chr11:1840558|1840908 hsa-miR-6734-5p 1 0 0
chr11:1840558|1840908 hsa-miR-4726-3p 1 0 0
chr11:1840558|1840908 hsa-miR-6765-5p 1 0 0
chr11:1840558|1840908 hsa-miR-149-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6822-3p 1 0 0
chr11:1840558|1840908 hsa-miR-6515-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6880-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6760-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6850-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6858-3p 1 0 0
chr11:1840558|1840908 hsa-miR-6786-5p 1 0 0
chr11:1840558|1840908 hsa-miR-939-3p 1 0 0
chr11:1840558|1840908 hsa-miR-1909-5p 1 0 0
chr11:1840558|1840908 hsa-miR-1228-5p 1 0 0
chr11:1840558|1840908 hsa-miR-3677-3p 1 0 0
chr11:1840558|1840908 hsa-miR-6769a-3p 1 0 0
chr11:1840558|1840908 hsa-miR-423-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6886-3p 1 0 0
chr11:1840558|1840908 hsa-miR-4749-3p 1 0 0
chr11:1840558|1840908 hsa-miR-4763-3p 1 0 0
chr11:1840558|1840908 hsa-miR-6812-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6775-5p 1 0 0
chr11:1840558|1840908 hsa-miR-1343-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6743-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6752-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6803-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6851-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6797-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6808-5p 1 0 0
chr11:1840558|1840908 hsa-miR-3127-3p 1 0 0
chr11:1840558|1840908 hsa-miR-6780b-5p 1 0 0
chr11:1840558|1840908 hsa-miR-328-5p 1 0 0
chr11:1840558|1840908 hsa-miR-4632-5p 1 0 0
chr11:1840558|1840908 hsa-miR-675-5p 1 0 0
chr11:1840558|1840908 hsa-miR-6858-5p 1 0 0
chr11:1840558|1840908 hsa-miR-939-5p 1 0 0
chr11:1840558|1840908 hsa-miR-10396a-3p 1 0 0
chr11:1840558|1840908 hsa-miR-10396b-3p 1 0 0
chr11:1840558|1840908 hsa-miR-6791-5p 1 0 0
chr11:1840558|1840908 hsa-miR-10392-3p 1 0 0
chr11:1840558|1840908 hsa-miR-6797-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:1840558|1840908
ORF Type ORF1
Protein Length 112
Nucleotide Length 336
Protein Sequence MHPHLHVVLLLFSRIDLGVQLFAELLGVGVGAGGRPDTWQPRSPAPALTTPLALLTSGETELAGRPAAGEAGWPGRGWYLHFRHGARDMQRRAVLRQVVLLLCLTAALLLLQ
Nucleotide Sequence CTGCACCCTCACCTCCATGTCGTACTTCTCCTCTTCAGCCGCATCGATCTTGGCGTGCAGCTGTTTGCAGAGCTCCTAGGGGTGGGTGTGGGGGCGGGCGGCCGTCCTGACACTTGGCAGCCACGGTCACCTGCCCCTGCCCTGACCACCCCACTGGCCCTCTTGACAAGTGGGGAAACTGAGTTAGCAGGCAGGCCTGCTGCTGGGGAGGCGGGGTGGCCGGGGAGGGGCTGGTACCTGCACTTCAGACATGGAGCCCGGGATATGCAGCGGCGGGCAGTGCTCCGCCAGGTAGTTCTGCTTCTCTGCCTCACGGCGGCTCTCCTCCTTCTCCAG
CircID chr11:1840558|1840908
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MLVFCTLTSMSYFSSSAASILACSCLQSS
Nucleotide Sequence TTGCTGGTCTTCTGCACCCTCACCTCCATGTCGTACTTCTCCTCTTCAGCCGCATCGATCTTGGCGTGCAGCTGTTTGCAGAGCTCCTAG
CircID chr11:1840558|1840908
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MLLGRRGGRGGAGTCTSDMEPGICSGGQCSAR
Nucleotide Sequence CTGCTGCTGGGGAGGCGGGGTGGCCGGGGAGGGGCTGGTACCTGCACTTCAGACATGGAGCCCGGGATATGCAGCGGCGGGCAGTGCTCCGCCAGGTAG
CircID chr11:1840558|1840908
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MVPALQTWSPGYAAAGSAPPGSSASLPHGGSPPSP
Nucleotide Sequence CTGGTACCTGCACTTCAGACATGGAGCCCGGGATATGCAGCGGCGGGCAGTGCTCCGCCAGGTAGTTCTGCTTCTCTGCCTCACGGCGGCTCTCCTCCTTCTCCA
CircID chr11:1840558|1840908
ORF Type ORF5
Protein Length 50
Nucleotide Length 153
Protein Sequence LEKEESRREAEKQNYLAEHCPPLHIPGSMSEVQVPAPPRPPRLPSSRPAC
Nucleotide Sequence CTGGAGAAGGAGGAGAGCCGCCGTGAGGCAGAGAAGCAGAACTACCTGGCGGAGCACTGCCCGCCGCTGCATATCCCGGGCTCCATGTCTGAAGTGCAGGTACCAGCCCCTCCCCGGCCACCCCGCCTCCCCAGCAGCAGGCCTGCCTGCTAA
CircID chr11:1840558|1840908
ORF Type ORF6
Protein Length 25
Nucleotide Length 75
Protein Sequence MHAKIDAAEEEKYDMEVRVQKTSKE
Nucleotide Sequence CTGCACGCCAAGATCGATGCGGCTGAAGAGGAGAAGTACGACATGGAGGTGAGGGTGCAGAAGACCAGCAAGGAG
CircID chr11:1840558|1840908
ORF Type ORF7
Protein Length 79
Nucleotide Length 240
Protein Sequence MKCRYQPLPGHPASPAAGLPANSVSPLVKRASGVVRAGAGDRGCQVSGRPPAPTPTPRSSANSCTPRSMRLKRRSTTWR
Nucleotide Sequence CTGAAGTGCAGGTACCAGCCCCTCCCCGGCCACCCCGCCTCCCCAGCAGCAGGCCTGCCTGCTAACTCAGTTTCCCCACTTGTCAAGAGGGCCAGTGGGGTGGTCAGGGCAGGGGCAGGTGACCGTGGCTGCCAAGTGTCAGGACGGCCGCCCGCCCCCACACCCACCCCTAGGAGCTCTGCAAACAGCTGCACGCCAAGATCGATGCGGCTGAAGAGGAGAAGTACGACATGGAGGTGA
CircID chr11:1840558|1840908
ORF Type ORF8
Protein Length 51
Nucleotide Length 156
Protein Sequence MLTQFPHLSRGPVGWSGQGQVTVAAKCQDGRPPPHPPLGALQTAARQDRCG
Nucleotide Sequence CTGCTAACTCAGTTTCCCCACTTGTCAAGAGGGCCAGTGGGGTGGTCAGGGCAGGGGCAGGTGACCGTGGCTGCCAAGTGTCAGGACGGCCGCCCGCCCCCACACCCACCCCTAGGAGCTCTGCAAACAGCTGCACGCCAAGATCGATGCGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab