CircRNA Information

General Information
circRNA Basic Information
CircID chr11:19117623|19117741
Strand -
CircType exon
Host Gene ENSG00000177054.12;
Algorism CIRI2;
Sequence ACCTGATTCGGACCCGCCCGTCTTGACGTTGGCCCGGAGTCGGAGCGGTTCTGTTGATTTCTTTTTCAGCCCTGGCGTCTTAGCACCCGCCTTCACCCCACCCAGTCCAGTTTTCGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:19117623|19117741 hsa-miR-208a-5p 0 0 1
chr11:19117623|19117741 hsa-miR-208a-3p 0 0 1
chr11:19117623|19117741 hsa-miR-422a 1 1 1
chr11:19117623|19117741 hsa-miR-608 1 0 1
chr11:19117623|19117741 hsa-miR-421 0 0 1
chr11:19117623|19117741 hsa-miR-208b-5p 0 0 1
chr11:19117623|19117741 hsa-miR-208b-3p 0 0 1
chr11:19117623|19117741 hsa-miR-548e-5p 0 0 1
chr11:19117623|19117741 hsa-miR-548e-3p 0 0 1
chr11:19117623|19117741 hsa-miR-1293 1 0 1
chr11:19117623|19117741 hsa-miR-1288-5p 0 0 1
chr11:19117623|19117741 hsa-miR-1288-3p 0 0 1
chr11:19117623|19117741 hsa-miR-483-5p 0 0 1
chr11:19117623|19117741 hsa-miR-342-5p 0 0 1
chr11:19117623|19117741 hsa-miR-548a-3p 0 0 1
chr11:19117623|19117741 hsa-miR-378 0 0 1
chr11:19117623|19117741 hsa-miR-1269 0 0 1
chr11:19117623|19117741 hsa-miR-548f 0 0 1
chr11:19117623|19117741 hsa-miR-886-3p 0 0 1
chr11:19117623|19117741 hsa-miR-663a 1 0 0
chr11:19117623|19117741 hsa-miR-762 1 0 0
chr11:19117623|19117741 hsa-miR-378b 1 1 0
chr11:19117623|19117741 hsa-miR-3141 1 0 0
chr11:19117623|19117741 hsa-miR-3170 1 0 0
chr11:19117623|19117741 hsa-miR-378c 1 1 0
chr11:19117623|19117741 hsa-miR-4259 1 0 0
chr11:19117623|19117741 hsa-miR-3621 0 1 0
chr11:19117623|19117741 hsa-miR-378e 1 0 0
chr11:19117623|19117741 hsa-miR-378f 1 0 0
chr11:19117623|19117741 hsa-miR-4429 1 1 0
chr11:19117623|19117741 hsa-miR-378h 0 1 0
chr11:19117623|19117741 hsa-miR-4463 1 0 0
chr11:19117623|19117741 hsa-miR-4492 1 0 0
chr11:19117623|19117741 hsa-miR-4498 1 0 0
chr11:19117623|19117741 hsa-miR-4506 1 0 0
chr11:19117623|19117741 hsa-miR-4507 1 0 0
chr11:19117623|19117741 hsa-miR-1587 1 1 0
chr11:19117623|19117741 hsa-miR-4539 1 0 0
chr11:19117623|19117741 hsa-miR-4651 1 0 0
chr11:19117623|19117741 hsa-miR-4656 1 1 0
chr11:19117623|19117741 hsa-miR-4674 1 0 0
chr11:19117623|19117741 hsa-miR-4675 1 0 0
chr11:19117623|19117741 hsa-miR-4710 1 1 0
chr11:19117623|19117741 hsa-miR-4734 1 0 0
chr11:19117623|19117741 hsa-miR-4741 1 0 0
chr11:19117623|19117741 hsa-miR-4767 1 0 0
chr11:19117623|19117741 hsa-miR-5572 1 0 0
chr11:19117623|19117741 hsa-miR-5787 1 0 0
chr11:19117623|19117741 hsa-miR-6069 1 0 0
chr11:19117623|19117741 hsa-miR-6745 1 0 0
chr11:19117623|19117741 hsa-miR-6860 1 0 0
chr11:19117623|19117741 hsa-miR-8077 1 0 0
chr11:19117623|19117741 hsa-miR-6747-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6765-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6861-5p 1 0 0
chr11:19117623|19117741 hsa-miR-8071 1 0 0
chr11:19117623|19117741 hsa-miR-6089 1 0 0
chr11:19117623|19117741 hsa-miR-6730-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6741-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6776-5p 1 1 0
chr11:19117623|19117741 hsa-miR-6742-5p 1 1 0
chr11:19117623|19117741 hsa-miR-3180-3p 1 0 0
chr11:19117623|19117741 hsa-miR-6748-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6772-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6796-5p 1 0 0
chr11:19117623|19117741 hsa-miR-185-3p 1 0 0
chr11:19117623|19117741 hsa-miR-6829-5p 1 0 0
chr11:19117623|19117741 hsa-miR-5006-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6786-5p 1 0 0
chr11:19117623|19117741 hsa-miR-7109-5p 1 0 0
chr11:19117623|19117741 hsa-miR-1226-5p 1 0 0
chr11:19117623|19117741 hsa-miR-3944-3p 1 0 0
chr11:19117623|19117741 hsa-miR-4786-3p 1 0 0
chr11:19117623|19117741 hsa-miR-1229-5p 1 0 0
chr11:19117623|19117741 hsa-miR-4640-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6753-5p 1 0 0
chr11:19117623|19117741 hsa-miR-1228-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6501-5p 1 0 0
chr11:19117623|19117741 hsa-miR-4446-3p 1 1 0
chr11:19117623|19117741 hsa-miR-6802-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6786-3p 1 0 0
chr11:19117623|19117741 hsa-miR-6877-5p 1 0 0
chr11:19117623|19117741 hsa-miR-664b-5p 1 0 0
chr11:19117623|19117741 hsa-miR-4639-5p 0 1 0
chr11:19117623|19117741 hsa-miR-10400-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6769b-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6787-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6812-5p 1 1 0
chr11:19117623|19117741 hsa-miR-5001-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6737-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6756-5p 1 1 0
chr11:19117623|19117741 hsa-miR-6769a-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6819-5p 1 1 0
chr11:19117623|19117741 hsa-miR-6779-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6780a-5p 1 0 0
chr11:19117623|19117741 hsa-miR-3620-5p 1 1 0
chr11:19117623|19117741 hsa-miR-4728-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6780b-5p 1 0 0
chr11:19117623|19117741 hsa-miR-10392-5p 1 0 0
chr11:19117623|19117741 hsa-miR-10396b-5p 1 0 0
chr11:19117623|19117741 hsa-miR-4649-5p 1 0 0
chr11:19117623|19117741 hsa-miR-4685-5p 1 1 0
chr11:19117623|19117741 hsa-miR-4701-3p 1 0 0
chr11:19117623|19117741 hsa-miR-4745-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6729-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6848-5p 1 0 0
chr11:19117623|19117741 hsa-miR-3187-5p 1 0 0
chr11:19117623|19117741 hsa-miR-4758-5p 1 0 0
chr11:19117623|19117741 hsa-miR-4769-5p 1 0 0
chr11:19117623|19117741 hsa-miR-1266-5p 1 0 0
chr11:19117623|19117741 hsa-miR-3940-5p 1 0 0
chr11:19117623|19117741 hsa-miR-6855-5p 1 0 0
chr11:19117623|19117741 hsa-miR-378a-3p 1 1 0
chr11:19117623|19117741 hsa-miR-320a-3p 1 1 0
chr11:19117623|19117741 hsa-miR-320b 1 1 0
chr11:19117623|19117741 hsa-miR-320c 0 1 0
chr11:19117623|19117741 hsa-miR-6837-5p 0 1 0
chr11:19117623|19117741 hsa-miR-330-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr11:19117623|19117741
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MTLARSRSGSVDFFFSPGVLAPAFTPPSPVFA
Nucleotide Sequence TTGACGTTGGCCCGGAGTCGGAGCGGTTCTGTTGATTTCTTTTTCAGCCCTGGCGTCTTAGCACCCGCCTTCACCCCACCCAGTCCAGTTTTCGCT
CircID chr11:19117623|19117741
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MGGVKAGAKTPGLKKKSTEPLRLRANVKTGGSESG
Nucleotide Sequence CTGGGTGGGGTGAAGGCGGGTGCTAAGACGCCAGGGCTGAAAAAGAAATCAACAGAACCGCTCCGACTCCGGGCCAACGTCAAGACGGGCGGGTCCGAATCAGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab