CircRNA Information

General Information
circRNA Basic Information
CircID chr11:2396640|2396906
Strand -
CircType exon
Host Gene ENSG00000110651.10;
Algorism CIRI2;
Sequence CAGAAGATCGATGACCTCTTCTCCGGGAAGCTGTACCTCATCGGCATTGCTGCCATCGTGGTCGCTGTGATCATGGTGAGCGGGCGGGGGCGGAGGGCCTGCTCTCTGGGCTGCCCCTTCCGCGGGGCCTTGTGCTGACTGCGCCCCCCACCACCCTCCTGCAGATCTTCGAGATGATCCTGAGCATGGTGCTGTGCTGTGGCATCCGGAACAGCTCCGTGTACTGAGGCCCCGCAGCTCTGGCCACAGGGACCTCTGCAGTGCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:2396640|2396906 hsa-let-7b-5p 0 0 1
chr11:2396640|2396906 hsa-let-7b-3p 0 0 1
chr11:2396640|2396906 hsa-let-7c-5p 0 0 1
chr11:2396640|2396906 hsa-let-7c-3p 0 0 1
chr11:2396640|2396906 hsa-let-7d-5p 0 0 1
chr11:2396640|2396906 hsa-let-7d-3p 0 0 1
chr11:2396640|2396906 hsa-let-7e-5p 0 0 1
chr11:2396640|2396906 hsa-let-7e-3p 0 0 1
chr11:2396640|2396906 hsa-miR-29a-5p 0 0 1
chr11:2396640|2396906 hsa-miR-29a-3p 0 0 1
chr11:2396640|2396906 hsa-miR-98-5p 0 0 1
chr11:2396640|2396906 hsa-miR-98-3p 0 0 1
chr11:2396640|2396906 hsa-let-7g-5p 0 0 1
chr11:2396640|2396906 hsa-let-7g-3p 0 0 1
chr11:2396640|2396906 hsa-let-7i-5p 0 0 1
chr11:2396640|2396906 hsa-let-7i-3p 0 0 1
chr11:2396640|2396906 hsa-miR-29c-5p 0 0 1
chr11:2396640|2396906 hsa-miR-29c-3p 0 0 1
chr11:2396640|2396906 hsa-miR-202-5p 0 0 1
chr11:2396640|2396906 hsa-miR-202-3p 0 0 1
chr11:2396640|2396906 hsa-miR-558 0 0 1
chr11:2396640|2396906 hsa-miR-602 1 0 1
chr11:2396640|2396906 hsa-miR-541-5p 0 0 1
chr11:2396640|2396906 hsa-miR-541-3p 0 0 1
chr11:2396640|2396906 hsa-miR-744-5p 0 0 1
chr11:2396640|2396906 hsa-miR-744-3p 0 0 1
chr11:2396640|2396906 hsa-miR-663b 0 0 1
chr11:2396640|2396906 hsa-miR-1205 0 0 1
chr11:2396640|2396906 hsa-miR-1286 0 0 1
chr11:2396640|2396906 hsa-miR-1293 0 0 1
chr11:2396640|2396906 hsa-miR-1253 0 0 1
chr11:2396640|2396906 hsa-miR-486-3p 1 1 1
chr11:2396640|2396906 hsa-miR-885-3p 0 0 1
chr11:2396640|2396906 hsa-miR-767-5p 0 0 1
chr11:2396640|2396906 hsa-miR-339-5p 0 0 1
chr11:2396640|2396906 hsa-miR-1184 0 0 1
chr11:2396640|2396906 hsa-miR-654-5p 0 0 1
chr11:2396640|2396906 hsa-miR-509-3-5p 0 1 1
chr11:2396640|2396906 hsa-miR-509-5p 0 0 1
chr11:2396640|2396906 hsa-miR-1274a 0 0 1
chr11:2396640|2396906 hsa-miR-1274b 0 0 1
chr11:2396640|2396906 hsa-let-7a 0 0 1
chr11:2396640|2396906 hsa-let-7f 0 0 1
chr11:2396640|2396906 hsa-miR-29b 0 0 1
chr11:2396640|2396906 hsa-miR-484 0 1 0
chr11:2396640|2396906 hsa-miR-663a 1 0 0
chr11:2396640|2396906 hsa-miR-658 1 0 0
chr11:2396640|2396906 hsa-miR-665 1 0 0
chr11:2396640|2396906 hsa-miR-1182 1 0 0
chr11:2396640|2396906 hsa-miR-1183 1 0 0
chr11:2396640|2396906 hsa-miR-1470 0 1 0
chr11:2396640|2396906 hsa-miR-1538 1 0 0
chr11:2396640|2396906 hsa-miR-2278 0 1 0
chr11:2396640|2396906 hsa-miR-3137 1 0 0
chr11:2396640|2396906 hsa-miR-4281 1 1 0
chr11:2396640|2396906 hsa-miR-4290 0 1 0
chr11:2396640|2396906 hsa-miR-4447 0 1 0
chr11:2396640|2396906 hsa-miR-4479 1 0 0
chr11:2396640|2396906 hsa-miR-4516 0 1 0
chr11:2396640|2396906 hsa-miR-4683 1 0 0
chr11:2396640|2396906 hsa-miR-4688 0 1 0
chr11:2396640|2396906 hsa-miR-4706 1 0 0
chr11:2396640|2396906 hsa-miR-4734 1 1 0
chr11:2396640|2396906 hsa-miR-5682 0 1 0
chr11:2396640|2396906 hsa-miR-6081 1 0 0
chr11:2396640|2396906 hsa-miR-6125 0 1 0
chr11:2396640|2396906 hsa-miR-6165 1 0 0
chr11:2396640|2396906 hsa-miR-9899 1 0 0
chr11:2396640|2396906 hsa-miR-12127 1 1 0
chr11:2396640|2396906 hsa-miR-4435 1 1 0
chr11:2396640|2396906 hsa-miR-6089 1 0 0
chr11:2396640|2396906 hsa-miR-6880-5p 1 0 0
chr11:2396640|2396906 hsa-miR-4722-5p 1 1 0
chr11:2396640|2396906 hsa-miR-3677-5p 1 0 0
chr11:2396640|2396906 hsa-miR-3187-3p 1 0 0
chr11:2396640|2396906 hsa-miR-7108-5p 1 1 0
chr11:2396640|2396906 hsa-miR-6805-5p 0 1 0
chr11:2396640|2396906 hsa-miR-3156-5p 0 1 0
chr11:2396640|2396906 hsa-miR-6786-5p 1 0 0
chr11:2396640|2396906 hsa-miR-7109-5p 0 1 0
chr11:2396640|2396906 hsa-miR-7108-3p 0 1 0
chr11:2396640|2396906 hsa-miR-6803-3p 0 1 0
chr11:2396640|2396906 hsa-miR-6771-5p 1 0 0
chr11:2396640|2396906 hsa-miR-6501-5p 1 0 0
chr11:2396640|2396906 hsa-miR-4787-5p 1 0 0
chr11:2396640|2396906 hsa-miR-146b-3p 0 1 0
chr11:2396640|2396906 hsa-miR-4687-5p 0 1 0
chr11:2396640|2396906 hsa-miR-6886-3p 0 1 0
chr11:2396640|2396906 hsa-miR-5197-3p 0 1 0
chr11:2396640|2396906 hsa-miR-6851-3p 0 1 0
chr11:2396640|2396906 hsa-miR-4797-3p 0 1 0
chr11:2396640|2396906 hsa-miR-29b-3p 0 1 0
chr11:2396640|2396906 hsa-miR-1233-5p 1 0 0
chr11:2396640|2396906 hsa-miR-4763-3p 1 0 0
chr11:2396640|2396906 hsa-miR-6816-5p 1 0 0
chr11:2396640|2396906 hsa-miR-6775-5p 0 1 0
chr11:2396640|2396906 hsa-miR-1343-5p 1 0 0
chr11:2396640|2396906 hsa-miR-6743-5p 1 1 0
chr11:2396640|2396906 hsa-miR-6752-5p 1 0 0
chr11:2396640|2396906 hsa-miR-6803-5p 1 0 0
chr11:2396640|2396906 hsa-miR-6722-3p 1 1 0
chr11:2396640|2396906 hsa-miR-10396a-5p 1 1 0
chr11:2396640|2396906 hsa-miR-10396b-5p 1 0 0
chr11:2396640|2396906 hsa-miR-328-5p 1 1 0
chr11:2396640|2396906 hsa-miR-4726-5p 1 0 0
chr11:2396640|2396906 hsa-miR-6795-5p 1 0 0
chr11:2396640|2396906 hsa-miR-4697-5p 1 1 0
chr11:2396640|2396906 hsa-miR-6885-5p 1 1 0
chr11:2396640|2396906 hsa-miR-4665-5p 1 0 0
chr11:2396640|2396906 hsa-miR-10398-3p 0 1 0
chr11:2396640|2396906 hsa-miR-3679-5p 1 0 0
chr11:2396640|2396906 hsa-miR-4472 0 1 0
chr11:2396640|2396906 hsa-miR-3184-5p 1 1 0
chr11:2396640|2396906 hsa-miR-6791-5p 1 0 0
chr11:2396640|2396906 hsa-miR-6775-3p 1 0 0
chr11:2396640|2396906 hsa-miR-10392-3p 1 0 0
chr11:2396640|2396906 hsa-miR-4690-3p 0 1 0
chr11:2396640|2396906 hsa-miR-3064-3p 0 1 0
chr11:2396640|2396906 hsa-miR-4670-5p 0 1 0
chr11:2396640|2396906 hsa-miR-10399-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr11:2396640|2396906
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MYLIGIAAIVVAVIMVSGRGRRACSLGCPFRGALC
Nucleotide Sequence CTGTACCTCATCGGCATTGCTGCCATCGTGGTCGCTGTGATCATGGTGAGCGGGCGGGGGCGGAGGGCCTGCTCTCTGGGCTGCCCCTTCCGCGGGGCCTTGTGCTGA
CircID chr11:2396640|2396906
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MLSGLPLPRGLVLTAPPTTLLQIFEMILSMVLCCGIRNSSVY
Nucleotide Sequence CTGCTCTCTGGGCTGCCCCTTCCGCGGGGCCTTGTGCTGACTGCGCCCCCCACCACCCTCCTGCAGATCTTCGAGATGATCCTGAGCATGGTGCTGTGCTGTGGCATCCGGAACAGCTCCGTGTACTGA
CircID chr11:2396640|2396906
ORF Type ORF3
Protein Length 87
Nucleotide Length 261
Protein Sequence MQRSLWPELRGLSTRSCSGCHSTAPCSGSSRRSAGGWWGAQSAQGPAEGAAQRAGPPPPPAHHDHSDHDGSNADEVQLPGEEVIDLL
Nucleotide Sequence CTGCAGAGGTCCCTGTGGCCAGAGCTGCGGGGCCTCAGTACACGGAGCTGTTCCGGATGCCACAGCACAGCACCATGCTCAGGATCATCTCGAAGATCTGCAGGAGGGTGGTGGGGGGCGCAGTCAGCACAAGGCCCCGCGGAAGGGGCAGCCCAGAGAGCAGGCCCTCCGCCCCCGCCCGCTCACCATGATCACAGCGACCACGATGGCAGCAATGCCGATGAGGTACAGCTTCCCGGAGAAGAGGTCATCGATCTTCTG
CircID chr11:2396640|2396906
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MQEGGGGRSQHKAPRKGQPREQALRPRPLTMITATTMAAMPMRYSFPEKRSSIF
Nucleotide Sequence CTGCAGGAGGGTGGTGGGGGGCGCAGTCAGCACAAGGCCCCGCGGAAGGGGCAGCCCAGAGAGCAGGCCCTCCGCCCCCGCCCGCTCACCATGATCACAGCGACCACGATGGCAGCAATGCCGATGAGGTACAGCTTCCCGGAGAAGAGGTCATCGATCTTC
CircID chr11:2396640|2396906
ORF Type ORF5
Protein Length 47
Nucleotide Length 144
Protein Sequence MFRMPQHSTMLRIISKICRRVVGGAVSTRPRGRGSPESRPSAPARSP
Nucleotide Sequence CTGTTCCGGATGCCACAGCACAGCACCATGCTCAGGATCATCTCGAAGATCTGCAGGAGGGTGGTGGGGGGCGCAGTCAGCACAAGGCCCCGCGGAAGGGGCAGCCCAGAGAGCAGGCCCTCCGCCCCCGCCCGCTCACCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab