CircRNA Information

General Information
circRNA Basic Information
CircID chr11:287884|288080
Strand +
CircType exon
Host Gene ENSG00000255026.1;
Algorism CIRI2;
Sequence CTCCAACACGCCGTGGGCCCACACCTCCTCCTGGAGTGGCTCAGTCGCTCCCAACTTACGCCTTTGTTGAGAACAGAACCCCCACAACATTTAAGGCAGGCCCTGCACTCTGCCCAGAAGGCAGCCATGGCGCCCAACTCACGGAGGACGATCCAAAAGCGCTCCTCACGCAAGCTCCACCCGGCGCAAACCCCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:287884|288080 hsa-miR-382-5p 0 0 1
chr11:287884|288080 hsa-miR-382-3p 0 0 1
chr11:287884|288080 hsa-miR-571 0 1 1
chr11:287884|288080 hsa-miR-604 0 0 1
chr11:287884|288080 hsa-miR-612 0 1 1
chr11:287884|288080 hsa-miR-647 0 0 1
chr11:287884|288080 hsa-miR-765 0 0 1
chr11:287884|288080 hsa-miR-665 0 1 1
chr11:287884|288080 hsa-miR-920 0 0 1
chr11:287884|288080 hsa-miR-1237-5p 0 0 1
chr11:287884|288080 hsa-miR-1237-3p 0 0 1
chr11:287884|288080 hsa-miR-513c-5p 0 0 1
chr11:287884|288080 hsa-miR-513c-3p 0 0 1
chr11:287884|288080 hsa-miR-296-5p 0 0 1
chr11:287884|288080 hsa-miR-491-5p 0 0 1
chr11:287884|288080 hsa-miR-508-5p 0 1 1
chr11:287884|288080 hsa-miR-409-3p 0 0 1
chr11:287884|288080 hsa-miR-1285 0 0 1
chr11:287884|288080 hsa-miR-219-1-3p 0 0 1
chr11:287884|288080 hsa-miR-608 1 0 0
chr11:287884|288080 hsa-miR-638 1 0 0
chr11:287884|288080 hsa-miR-663a 1 0 0
chr11:287884|288080 hsa-miR-762 1 0 0
chr11:287884|288080 hsa-miR-759 0 1 0
chr11:287884|288080 hsa-miR-1205 1 1 0
chr11:287884|288080 hsa-miR-2861 1 0 0
chr11:287884|288080 hsa-miR-3147 1 0 0
chr11:287884|288080 hsa-miR-4296 1 1 0
chr11:287884|288080 hsa-miR-4322 1 1 0
chr11:287884|288080 hsa-miR-4259 0 1 0
chr11:287884|288080 hsa-miR-4265 0 1 0
chr11:287884|288080 hsa-miR-4447 0 1 0
chr11:287884|288080 hsa-miR-4449 1 0 0
chr11:287884|288080 hsa-miR-4466 1 0 0
chr11:287884|288080 hsa-miR-3689c 1 0 0
chr11:287884|288080 hsa-miR-4488 1 0 0
chr11:287884|288080 hsa-miR-4656 1 0 0
chr11:287884|288080 hsa-miR-4706 1 0 0
chr11:287884|288080 hsa-miR-4710 1 0 0
chr11:287884|288080 hsa-miR-4739 1 0 0
chr11:287884|288080 hsa-miR-4741 1 0 0
chr11:287884|288080 hsa-miR-5090 1 0 0
chr11:287884|288080 hsa-miR-5194 1 0 0
chr11:287884|288080 hsa-miR-6860 0 1 0
chr11:287884|288080 hsa-miR-9899 0 1 0
chr11:287884|288080 hsa-miR-12114 1 1 0
chr11:287884|288080 hsa-miR-12115 1 0 0
chr11:287884|288080 hsa-miR-504-3p 1 1 0
chr11:287884|288080 hsa-miR-6747-5p 1 0 0
chr11:287884|288080 hsa-miR-6861-5p 1 0 0
chr11:287884|288080 hsa-miR-7106-5p 1 0 0
chr11:287884|288080 hsa-miR-6825-5p 1 1 0
chr11:287884|288080 hsa-miR-6894-5p 1 0 0
chr11:287884|288080 hsa-miR-6799-5p 1 0 0
chr11:287884|288080 hsa-miR-3934-5p 1 0 0
chr11:287884|288080 hsa-miR-4695-5p 1 0 0
chr11:287884|288080 hsa-miR-197-5p 1 0 0
chr11:287884|288080 hsa-miR-6793-5p 1 0 0
chr11:287884|288080 hsa-miR-6796-5p 1 0 0
chr11:287884|288080 hsa-miR-6732-5p 1 1 0
chr11:287884|288080 hsa-miR-6805-5p 1 0 0
chr11:287884|288080 hsa-miR-6827-5p 1 0 0
chr11:287884|288080 hsa-miR-6782-5p 1 0 0
chr11:287884|288080 hsa-miR-6786-5p 1 0 0
chr11:287884|288080 hsa-miR-1909-5p 1 0 0
chr11:287884|288080 hsa-miR-1228-5p 1 0 0
chr11:287884|288080 hsa-miR-6749-5p 1 0 0
chr11:287884|288080 hsa-miR-4787-5p 1 0 0
chr11:287884|288080 hsa-miR-6857-3p 0 1 0
chr11:287884|288080 hsa-miR-7159-5p 1 1 0
chr11:287884|288080 hsa-miR-1233-5p 1 0 0
chr11:287884|288080 hsa-miR-3689b-3p 1 0 0
chr11:287884|288080 hsa-miR-6769b-5p 1 0 0
chr11:287884|288080 hsa-miR-6775-5p 1 0 0
chr11:287884|288080 hsa-miR-1343-5p 1 0 0
chr11:287884|288080 hsa-miR-6726-5p 1 0 0
chr11:287884|288080 hsa-miR-6752-5p 1 1 0
chr11:287884|288080 hsa-miR-6756-5p 1 1 0
chr11:287884|288080 hsa-miR-6803-5p 1 0 0
chr11:287884|288080 hsa-miR-6819-5p 1 0 0
chr11:287884|288080 hsa-miR-6842-5p 1 0 0
chr11:287884|288080 hsa-miR-6851-5p 1 0 0
chr11:287884|288080 hsa-miR-7110-5p 1 0 0
chr11:287884|288080 hsa-miR-10401-5p 1 1 0
chr11:287884|288080 hsa-miR-11181-3p 1 0 0
chr11:287884|288080 hsa-miR-1249-5p 1 0 0
chr11:287884|288080 hsa-miR-6751-5p 1 0 0
chr11:287884|288080 hsa-miR-7111-5p 1 0 0
chr11:287884|288080 hsa-miR-3620-5p 1 0 0
chr11:287884|288080 hsa-miR-5189-5p 0 1 0
chr11:287884|288080 hsa-miR-6836-5p 1 0 0
chr11:287884|288080 hsa-miR-3689a-3p 1 0 0
chr11:287884|288080 hsa-miR-4649-5p 1 0 0
chr11:287884|288080 hsa-miR-6729-5p 1 0 0
chr11:287884|288080 hsa-miR-6794-5p 1 0 0
chr11:287884|288080 hsa-miR-6858-5p 1 0 0
chr11:287884|288080 hsa-miR-3187-5p 0 1 0
chr11:287884|288080 hsa-miR-939-5p 1 0 0
chr11:287884|288080 hsa-miR-6773-5p 0 1 0
chr11:287884|288080 hsa-miR-4665-5p 1 0 0
chr11:287884|288080 hsa-miR-6855-5p 1 0 0
chr11:287884|288080 hsa-miR-4472 0 1 0
chr11:287884|288080 hsa-miR-3689d 1 1 0
chr11:287884|288080 hsa-miR-6724-5p 0 1 0
chr11:287884|288080 hsa-miR-6751-3p 0 1 0
chr11:287884|288080 hsa-miR-4691-5p 1 0 0
chr11:287884|288080 hsa-miR-7156-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:287884|288080
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MEWLSRSQLTPLLRTEPPQHLRQALHSAQKAAMAPNSRRTIQKRSSRKLHPAQTP
Nucleotide Sequence CTGGAGTGGCTCAGTCGCTCCCAACTTACGCCTTTGTTGAGAACAGAACCCCCACAACATTTAAGGCAGGCCCTGCACTCTGCCCAGAAGGCAGCCATGGCGCCCAACTCACGGAGGACGATCCAAAAGCGCTCCTCACGCAAGCTCCACCCGGCGCAAACCCCC
CircID chr11:287884|288080
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MPRRQPWRPTHGGRSKSAPHASSTRRKPP
Nucleotide Sequence CTGCCCAGAAGGCAGCCATGGCGCCCAACTCACGGAGGACGATCCAAAAGCGCTCCTCACGCAAGCTCCACCCGGCGCAAACCCCCT
CircID chr11:287884|288080
ORF Type ORF3
Protein Length 57
Nucleotide Length 171
Protein Sequence MREERFWIVLRELGAMAAFWAECRACLKCCGGSVLNKGVSWERLSHSRRRCGPTACW
Nucleotide Sequence TTGCGTGAGGAGCGCTTTTGGATCGTCCTCCGTGAGTTGGGCGCCATGGCTGCCTTCTGGGCAGAGTGCAGGGCCTGCCTTAAATGTTGTGGGGGTTCTGTTCTCAACAAAGGCGTAAGTTGGGAGCGACTGAGCCACTCCAGGAGGAGGTGTGGGCCCACGGCGTGTTGG
CircID chr11:287884|288080
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MLWGFCSQQRRKLGATEPLQEEVWAHGVLE
Nucleotide Sequence ATGTTGTGGGGGTTCTGTTCTCAACAAAGGCGTAAGTTGGGAGCGACTGAGCCACTCCAGGAGGAGGTGTGGGCCCACGGCGTGTTGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab