CircRNA Information

General Information
circRNA Basic Information
CircID chr11:292603|292931
Strand -
CircType exon
Host Gene ENSG00000142102.14;
Algorism CIRI2;
Sequence ATTTACGGAGTCCAGGAGGTCCACGTCAACGGGGCCGTGGTGTTGGCCTTCGAGCTGTACTACCATACCACCCAGGTGAGGTGCTGCGTGCCCACCATTCCTGCAAGTGTGGCCAGGCAGCTGGTGTAGCCCCCACTCCTCGTGGCTTCCTGTTTGGGGCTGGTCCTGGGAAGCTGGCTGAGGACAGGTGTCTCAATGCCAGGCCTTGCTTCTGGGCACAGACAGGCCACTAGGAATGAGAGTGACTGGGGCCCTGGCCTCTGTGCCTCCTCCTGCTCCCCAGGACCTGCAGCTATTTCGAGAGGCTGGTGGCTGGGACGTGGTCAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:292603|292931 hsa-miR-22-5p 0 0 1
chr11:292603|292931 hsa-miR-22-3p 0 0 1
chr11:292603|292931 hsa-miR-384 0 0 1
chr11:292603|292931 hsa-miR-422a 0 0 1
chr11:292603|292931 hsa-miR-492 0 0 1
chr11:292603|292931 hsa-miR-588 0 0 1
chr11:292603|292931 hsa-miR-650 0 1 1
chr11:292603|292931 hsa-miR-661 1 0 1
chr11:292603|292931 hsa-miR-657 0 0 1
chr11:292603|292931 hsa-miR-668-5p 0 0 1
chr11:292603|292931 hsa-miR-668-3p 0 0 1
chr11:292603|292931 hsa-miR-765 0 0 1
chr11:292603|292931 hsa-miR-541-5p 0 0 1
chr11:292603|292931 hsa-miR-541-3p 0 0 1
chr11:292603|292931 hsa-miR-939-5p 0 0 1
chr11:292603|292931 hsa-miR-939-3p 0 0 1
chr11:292603|292931 hsa-miR-1226-5p 0 0 1
chr11:292603|292931 hsa-miR-1226-3p 0 0 1
chr11:292603|292931 hsa-miR-1205 0 0 1
chr11:292603|292931 hsa-miR-1286 0 0 1
chr11:292603|292931 hsa-miR-1293 0 1 1
chr11:292603|292931 hsa-miR-1256 0 0 1
chr11:292603|292931 hsa-miR-671-5p 1 1 1
chr11:292603|292931 hsa-miR-296-5p 1 1 1
chr11:292603|292931 hsa-miR-654-5p 0 1 1
chr11:292603|292931 hsa-miR-151-5p 0 0 1
chr11:292603|292931 hsa-miR-378 0 0 1
chr11:292603|292931 hsa-miR-1254 0 0 1
chr11:292603|292931 hsa-miR-608 1 1 0
chr11:292603|292931 hsa-miR-611 1 0 0
chr11:292603|292931 hsa-miR-614 1 0 0
chr11:292603|292931 hsa-miR-1183 1 0 0
chr11:292603|292931 hsa-miR-4270 1 1 0
chr11:292603|292931 hsa-miR-4281 1 0 0
chr11:292603|292931 hsa-miR-3621 1 0 0
chr11:292603|292931 hsa-miR-3918 0 1 0
chr11:292603|292931 hsa-miR-4421 0 1 0
chr11:292603|292931 hsa-miR-4447 0 1 0
chr11:292603|292931 hsa-miR-4449 1 0 0
chr11:292603|292931 hsa-miR-4734 1 0 0
chr11:292603|292931 hsa-miR-4739 1 0 0
chr11:292603|292931 hsa-miR-6081 0 1 0
chr11:292603|292931 hsa-miR-6165 0 1 0
chr11:292603|292931 hsa-miR-7977 0 1 0
chr11:292603|292931 hsa-miR-8089 1 1 0
chr11:292603|292931 hsa-miR-12121 1 1 0
chr11:292603|292931 hsa-miR-4433b-3p 1 1 0
chr11:292603|292931 hsa-miR-214-5p 0 1 0
chr11:292603|292931 hsa-miR-4433a-3p 1 1 0
chr11:292603|292931 hsa-miR-6825-5p 0 1 0
chr11:292603|292931 hsa-miR-1972 0 1 0
chr11:292603|292931 hsa-miR-7851-3p 0 1 0
chr11:292603|292931 hsa-miR-4695-5p 0 1 0
chr11:292603|292931 hsa-miR-4722-5p 0 1 0
chr11:292603|292931 hsa-miR-874-5p 1 1 0
chr11:292603|292931 hsa-miR-6806-5p 0 1 0
chr11:292603|292931 hsa-miR-3189-5p 1 0 0
chr11:292603|292931 hsa-miR-6776-5p 0 1 0
chr11:292603|292931 hsa-miR-6787-3p 0 1 0
chr11:292603|292931 hsa-miR-6742-5p 1 0 0
chr11:292603|292931 hsa-miR-6827-5p 1 1 0
chr11:292603|292931 hsa-miR-6782-5p 1 0 0
chr11:292603|292931 hsa-miR-6765-3p 0 1 0
chr11:292603|292931 hsa-miR-3194-5p 0 1 0
chr11:292603|292931 hsa-miR-6882-3p 0 1 0
chr11:292603|292931 hsa-miR-221-3p 0 1 0
chr11:292603|292931 hsa-miR-6858-3p 0 1 0
chr11:292603|292931 hsa-miR-1343-3p 1 0 0
chr11:292603|292931 hsa-miR-6852-5p 0 1 0
chr11:292603|292931 hsa-miR-6771-5p 1 0 0
chr11:292603|292931 hsa-miR-4717-3p 1 0 0
chr11:292603|292931 hsa-miR-6749-5p 1 0 0
chr11:292603|292931 hsa-miR-3690 0 1 0
chr11:292603|292931 hsa-miR-6824-5p 1 0 0
chr11:292603|292931 hsa-miR-339-5p 1 0 0
chr11:292603|292931 hsa-miR-3065-3p 0 1 0
chr11:292603|292931 hsa-miR-7160-3p 0 1 0
chr11:292603|292931 hsa-miR-4708-3p 0 1 0
chr11:292603|292931 hsa-miR-7152-3p 1 0 0
chr11:292603|292931 hsa-miR-3120-5p 0 1 0
chr11:292603|292931 hsa-miR-660-3p 0 1 0
chr11:292603|292931 hsa-miR-4732-3p 0 1 0
chr11:292603|292931 hsa-miR-6794-3p 0 1 0
chr11:292603|292931 hsa-miR-1296-3p 0 1 0
chr11:292603|292931 hsa-miR-6748-3p 0 1 0
chr11:292603|292931 hsa-miR-5699-5p 0 1 0
chr11:292603|292931 hsa-miR-6737-5p 1 0 0
chr11:292603|292931 hsa-miR-6756-5p 1 0 0
chr11:292603|292931 hsa-miR-6851-5p 1 1 0
chr11:292603|292931 hsa-miR-11181-3p 0 1 0
chr11:292603|292931 hsa-miR-6722-3p 1 0 0
chr11:292603|292931 hsa-miR-6763-5p 1 1 0
chr11:292603|292931 hsa-miR-6836-5p 1 0 0
chr11:292603|292931 hsa-miR-328-5p 1 1 0
chr11:292603|292931 hsa-miR-4685-5p 1 1 0
chr11:292603|292931 hsa-miR-4726-5p 1 0 0
chr11:292603|292931 hsa-miR-6858-5p 1 0 0
chr11:292603|292931 hsa-miR-4700-5p 0 1 0
chr11:292603|292931 hsa-miR-4667-5p 1 1 0
chr11:292603|292931 hsa-miR-6791-5p 1 0 0
chr11:292603|292931 hsa-miR-6753-3p 1 1 0
chr11:292603|292931 hsa-miR-6837-5p 0 1 0
chr11:292603|292931 hsa-miR-10392-3p 1 0 0
chr11:292603|292931 hsa-miR-10394-5p 1 1 0
chr11:292603|292931 hsa-miR-5588-5p 0 1 0
chr11:292603|292931 hsa-miR-3064-3p 1 0 0
chr11:292603|292931 hsa-miR-10399-3p 1 1 0
chr11:292603|292931 hsa-miR-4704-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:292603|292931
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MAFELYYHTTQVRCCVPTIPASVARQLV
Nucleotide Sequence TTGGCCTTCGAGCTGTACTACCATACCACCCAGGTGAGGTGCTGCGTGCCCACCATTCCTGCAAGTGTGGCCAGGCAGCTGGTGTAG
CircID chr11:292603|292931
ORF Type ORF2
Protein Length 58
Nucleotide Length 174
Protein Sequence MGLVLGSWLRTGVSMPGLASGHRQATRNESDWGPGLCASSCSPGPAAISRGWWLGRGQ
Nucleotide Sequence TTGGGGCTGGTCCTGGGAAGCTGGCTGAGGACAGGTGTCTCAATGCCAGGCCTTGCTTCTGGGCACAGACAGGCCACTAGGAATGAGAGTGACTGGGGCCCTGGCCTCTGTGCCTCCTCCTGCTCCCCAGGACCTGCAGCTATTTCGAGAGGCTGGTGGCTGGGACGTGGTCAG
CircID chr11:292603|292931
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MQVWPGSWCSPHSSWLPVWGWSWEAG
Nucleotide Sequence CTGCAAGTGTGGCCAGGCAGCTGGTGTAGCCCCCACTCCTCGTGGCTTCCTGTTTGGGGCTGGTCCTGGGAAGCTGGCTGA
CircID chr11:292603|292931
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MLLGTDRPLGMRVTGALASVPPPAPQDLQLFREAGGWDVVR
Nucleotide Sequence TTGCTTCTGGGCACAGACAGGCCACTAGGAATGAGAGTGACTGGGGCCCTGGCCTCTGTGCCTCCTCCTGCTCCCCAGGACCTGCAGCTATTTCGAGAGGCTGGTGGCTGGGACGTGGTCAGG
CircID chr11:292603|292931
ORF Type ORF5
Protein Length 49
Nucleotide Length 150
Protein Sequence MRAHHSCKCGQAAGVAPTPRGFLFGAGPGKLAEDRCLNARPCFWAQTGH
Nucleotide Sequence CTGCGTGCCCACCATTCCTGCAAGTGTGGCCAGGCAGCTGGTGTAGCCCCCACTCCTCGTGGCTTCCTGTTTGGGGCTGGTCCTGGGAAGCTGGCTGAGGACAGGTGTCTCAATGCCAGGCCTTGCTTCTGGGCACAGACAGGCCACTAG
CircID chr11:292603|292931
ORF Type ORF6
Protein Length 28
Nucleotide Length 84
Protein Sequence MGPWPLCLLLLPRTCSYFERLVAGTWSG
Nucleotide Sequence CTGGGGCCCTGGCCTCTGTGCCTCCTCCTGCTCCCCAGGACCTGCAGCTATTTCGAGAGGCTGGTGGCTGGGACGTGGTCAGGG
CircID chr11:292603|292931
ORF Type ORF7
Protein Length 53
Nucleotide Length 162
Protein Sequence MCPEARPGIETPVLSQLPRTSPKQEATRSGGYTSCLATLAGMVGTQHLTWVVW
Nucleotide Sequence CTGTGCCCAGAAGCAAGGCCTGGCATTGAGACACCTGTCCTCAGCCAGCTTCCCAGGACCAGCCCCAAACAGGAAGCCACGAGGAGTGGGGGCTACACCAGCTGCCTGGCCACACTTGCAGGAATGGTGGGCACGCAGCACCTCACCTGGGTGGTATGGTAG
CircID chr11:292603|292931
ORF Type ORF8
Protein Length 58
Nucleotide Length 177
Protein Sequence MALRHLSSASFPGPAPNRKPRGVGATPAAWPHLQEWWARSTSPGWYGSTARRPTPRPR
Nucleotide Sequence CTGGCATTGAGACACCTGTCCTCAGCCAGCTTCCCAGGACCAGCCCCAAACAGGAAGCCACGAGGAGTGGGGGCTACACCAGCTGCCTGGCCACACTTGCAGGAATGGTGGGCACGCAGCACCTCACCTGGGTGGTATGGTAGTACAGCTCGAAGGCCAACACCACGGCCCCGTTGA
CircID chr11:292603|292931
ORF Type ORF9
Protein Length 44
Nucleotide Length 135
Protein Sequence LTTSQPPASRNSCRSWGAGGGTEARAPVTLIPSGLSVPRSKAWH
Nucleotide Sequence CTGACCACGTCCCAGCCACCAGCCTCTCGAAATAGCTGCAGGTCCTGGGGAGCAGGAGGAGGCACAGAGGCCAGGGCCCCAGTCACTCTCATTCCTAGTGGCCTGTCTGTGCCCAGAAGCAAGGCCTGGCATTGA
CircID chr11:292603|292931
ORF Type ORF10
Protein Length 40
Nucleotide Length 120
Protein Sequence MPGHTCRNGGHAAPHLGGMVVQLEGQHHGPVDVDLLDSVN
Nucleotide Sequence CTGCCTGGCCACACTTGCAGGAATGGTGGGCACGCAGCACCTCACCTGGGTGGTATGGTAGTACAGCTCGAAGGCCAACACCACGGCCCCGTTGACGTGGACCTCCTGGACTCCGTAAAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab