CircRNA Information

General Information
circRNA Basic Information
CircID chr11:308174|308304
Strand -
CircType exon
Host Gene ENSG00000185201.15;
Algorism CIRI2;
Sequence CCGATCACCGCTGGTCACCATGAACCACATTGTGCAAACCTTCTCTCCTGTCAACAGCGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGTGCCCCACAACCCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:308174|308304 hsa-miR-185-5p 0 0 1
chr11:308174|308304 hsa-miR-185-3p 0 0 1
chr11:308174|308304 hsa-miR-370-5p 0 0 1
chr11:308174|308304 hsa-miR-370-3p 0 0 1
chr11:308174|308304 hsa-miR-507 0 0 1
chr11:308174|308304 hsa-miR-557 0 1 1
chr11:308174|308304 hsa-miR-1206 0 0 1
chr11:308174|308304 hsa-miR-1267 0 0 1
chr11:308174|308304 hsa-miR-491-5p 0 0 1
chr11:308174|308304 hsa-miR-486-3p 0 0 1
chr11:308174|308304 hsa-miR-296-3p 0 1 1
chr11:308174|308304 hsa-miR-485-5p 1 1 1
chr11:308174|308304 hsa-miR-361-3p 0 0 1
chr11:308174|308304 hsa-miR-338-3p 0 1 1
chr11:308174|308304 hsa-miR-768-3p 0 0 1
chr11:308174|308304 hsa-miR-1294 1 0 0
chr11:308174|308304 hsa-miR-1976 0 1 0
chr11:308174|308304 hsa-miR-3147 1 0 0
chr11:308174|308304 hsa-miR-3175 1 0 0
chr11:308174|308304 hsa-miR-4268 0 1 0
chr11:308174|308304 hsa-miR-3660 1 1 0
chr11:308174|308304 hsa-miR-3689c 0 1 0
chr11:308174|308304 hsa-miR-4508 1 0 0
chr11:308174|308304 hsa-miR-5192 1 0 0
chr11:308174|308304 hsa-miR-6165 1 0 0
chr11:308174|308304 hsa-miR-7150 1 0 0
chr11:308174|308304 hsa-miR-9500 1 0 0
chr11:308174|308304 hsa-miR-92a-1-5p 1 0 0
chr11:308174|308304 hsa-miR-6734-5p 1 0 0
chr11:308174|308304 hsa-miR-4433a-3p 1 0 0
chr11:308174|308304 hsa-miR-6894-5p 1 0 0
chr11:308174|308304 hsa-miR-4687-3p 1 0 0
chr11:308174|308304 hsa-miR-125a-3p 1 0 0
chr11:308174|308304 hsa-miR-6799-5p 1 0 0
chr11:308174|308304 hsa-miR-6746-5p 1 0 0
chr11:308174|308304 hsa-miR-4722-5p 1 0 0
chr11:308174|308304 hsa-miR-3064-5p 1 0 0
chr11:308174|308304 hsa-miR-6748-5p 1 0 0
chr11:308174|308304 hsa-miR-6829-5p 1 0 0
chr11:308174|308304 hsa-miR-6760-5p 1 0 0
chr11:308174|308304 hsa-miR-6821-5p 1 0 0
chr11:308174|308304 hsa-miR-30b-3p 0 1 0
chr11:308174|308304 hsa-miR-6823-5p 0 1 0
chr11:308174|308304 hsa-miR-6802-5p 1 0 0
chr11:308174|308304 hsa-miR-3074-5p 0 1 0
chr11:308174|308304 hsa-miR-483-5p 1 0 0
chr11:308174|308304 hsa-miR-1233-5p 1 0 0
chr11:308174|308304 hsa-miR-1273h-5p 1 1 0
chr11:308174|308304 hsa-miR-3689b-3p 0 1 0
chr11:308174|308304 hsa-miR-6778-5p 1 0 0
chr11:308174|308304 hsa-miR-6779-5p 1 1 0
chr11:308174|308304 hsa-miR-6788-5p 1 0 0
chr11:308174|308304 hsa-miR-6797-5p 1 0 0
chr11:308174|308304 hsa-miR-5196-5p 1 0 0
chr11:308174|308304 hsa-miR-328-5p 1 0 0
chr11:308174|308304 hsa-miR-6846-5p 1 0 0
chr11:308174|308304 hsa-miR-6848-5p 1 0 0
chr11:308174|308304 hsa-miR-6858-5p 1 0 0
chr11:308174|308304 hsa-miR-6885-5p 1 0 0
chr11:308174|308304 hsa-miR-6731-5p 1 0 0
chr11:308174|308304 hsa-miR-6856-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:308174|308304
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MVTMNHIVQTFSPVNSGQPPNYEMLKEEQEVAMLGVPHNP
Nucleotide Sequence CTGGTCACCATGAACCACATTGTGCAAACCTTCTCTCCTGTCAACAGCGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGTGCCCCACAACCCT
CircID chr11:308174|308304
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MCKPSLLSTAASLPTTRCSRRSRKWLCWGCPTTL
Nucleotide Sequence TTGTGCAAACCTTCTCTCCTGTCAACAGCGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGTGCCCCACAACCCTG
CircID chr11:308174|308304
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MLLLEHLVVGRLAAVDRREGLHNVVHGDQR
Nucleotide Sequence CTGCTCCTCCTTGAGCATCTCGTAGTTGGGAGGCTGGCCGCTGTTGACAGGAGAGAAGGTTTGCACAATGTGGTTCATGGTGACCAGCGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab