CircRNA Information

General Information
circRNA Basic Information
CircID chr11:308199|308401
Strand -
CircType exon
Host Gene ENSG00000185201.15;
Algorism CIRI2;
Sequence CACATTGTGCAAACCTTCTCTCCTGTCAACAGCGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGTGCCCCACAACCCTGCTCCCCCGATGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTGGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:308199|308401 hsa-miR-185-5p 0 0 1
chr11:308199|308401 hsa-miR-185-3p 0 0 1
chr11:308199|308401 hsa-miR-370-5p 0 0 1
chr11:308199|308401 hsa-miR-370-3p 0 0 1
chr11:308199|308401 hsa-miR-433-5p 0 0 1
chr11:308199|308401 hsa-miR-433-3p 0 0 1
chr11:308199|308401 hsa-miR-507 0 0 1
chr11:308199|308401 hsa-miR-557 0 0 1
chr11:308199|308401 hsa-miR-564 0 0 1
chr11:308199|308401 hsa-miR-609 0 0 1
chr11:308199|308401 hsa-miR-639 1 1 1
chr11:308199|308401 hsa-miR-653-5p 0 0 1
chr11:308199|308401 hsa-miR-653-3p 0 0 1
chr11:308199|308401 hsa-miR-939-5p 0 0 1
chr11:308199|308401 hsa-miR-939-3p 0 0 1
chr11:308199|308401 hsa-miR-1206 0 0 1
chr11:308199|308401 hsa-miR-1267 0 0 1
chr11:308199|308401 hsa-miR-491-5p 1 0 1
chr11:308199|308401 hsa-miR-486-3p 0 0 1
chr11:308199|308401 hsa-miR-296-3p 0 1 1
chr11:308199|308401 hsa-miR-485-5p 1 1 1
chr11:308199|308401 hsa-miR-361-3p 0 0 1
chr11:308199|308401 hsa-miR-338-3p 0 1 1
chr11:308199|308401 hsa-miR-720 0 0 1
chr11:308199|308401 hsa-miR-768-3p 0 0 1
chr11:308199|308401 hsa-miR-638 1 0 0
chr11:308199|308401 hsa-miR-650 1 0 0
chr11:308199|308401 hsa-miR-1294 1 0 0
chr11:308199|308401 hsa-miR-1976 0 1 0
chr11:308199|308401 hsa-miR-3138 1 1 0
chr11:308199|308401 hsa-miR-3147 1 0 0
chr11:308199|308401 hsa-miR-3154 1 0 0
chr11:308199|308401 hsa-miR-3175 1 0 0
chr11:308199|308401 hsa-miR-4321 1 0 0
chr11:308199|308401 hsa-miR-4268 0 1 0
chr11:308199|308401 hsa-miR-3660 1 1 0
chr11:308199|308401 hsa-miR-3911 1 1 0
chr11:308199|308401 hsa-miR-4462 1 0 0
chr11:308199|308401 hsa-miR-3689c 0 1 0
chr11:308199|308401 hsa-miR-4491 0 1 0
chr11:308199|308401 hsa-miR-4508 1 0 0
chr11:308199|308401 hsa-miR-4689 1 0 0
chr11:308199|308401 hsa-miR-4706 1 0 0
chr11:308199|308401 hsa-miR-4721 1 0 0
chr11:308199|308401 hsa-miR-4734 1 0 0
chr11:308199|308401 hsa-miR-4752 0 1 0
chr11:308199|308401 hsa-miR-4754 1 0 0
chr11:308199|308401 hsa-miR-5698 0 1 0
chr11:308199|308401 hsa-miR-6090 1 0 0
chr11:308199|308401 hsa-miR-6165 1 0 0
chr11:308199|308401 hsa-miR-7150 1 0 0
chr11:308199|308401 hsa-miR-8060 0 1 0
chr11:308199|308401 hsa-miR-1843 1 0 0
chr11:308199|308401 hsa-miR-135a-3p 0 1 0
chr11:308199|308401 hsa-miR-105-3p 0 1 0
chr11:308199|308401 hsa-miR-92a-1-5p 1 0 0
chr11:308199|308401 hsa-miR-6734-5p 1 0 0
chr11:308199|308401 hsa-miR-6747-5p 0 1 0
chr11:308199|308401 hsa-miR-4433a-3p 1 0 0
chr11:308199|308401 hsa-miR-6765-5p 1 0 0
chr11:308199|308401 hsa-miR-124-5p 1 0 0
chr11:308199|308401 hsa-miR-7106-5p 1 0 0
chr11:308199|308401 hsa-miR-6894-5p 1 0 0
chr11:308199|308401 hsa-miR-4687-3p 1 0 0
chr11:308199|308401 hsa-miR-6799-5p 1 0 0
chr11:308199|308401 hsa-miR-8071 1 0 0
chr11:308199|308401 hsa-miR-6804-5p 1 1 0
chr11:308199|308401 hsa-miR-3622a-5p 1 1 0
chr11:308199|308401 hsa-miR-3192-5p 1 0 0
chr11:308199|308401 hsa-miR-6746-5p 1 0 0
chr11:308199|308401 hsa-miR-4709-3p 0 1 0
chr11:308199|308401 hsa-miR-4722-5p 1 0 0
chr11:308199|308401 hsa-miR-3064-5p 1 0 0
chr11:308199|308401 hsa-miR-3622b-5p 1 0 0
chr11:308199|308401 hsa-miR-6742-5p 1 0 0
chr11:308199|308401 hsa-miR-6829-5p 1 0 0
chr11:308199|308401 hsa-miR-6760-5p 1 0 0
chr11:308199|308401 hsa-miR-30b-3p 1 1 0
chr11:308199|308401 hsa-miR-6850-5p 1 0 0
chr11:308199|308401 hsa-miR-6786-5p 1 0 0
chr11:308199|308401 hsa-miR-3691-5p 1 0 0
chr11:308199|308401 hsa-miR-4764-5p 0 1 0
chr11:308199|308401 hsa-miR-6771-5p 1 0 0
chr11:308199|308401 hsa-miR-6823-5p 0 1 0
chr11:308199|308401 hsa-miR-4717-3p 0 1 0
chr11:308199|308401 hsa-miR-4787-5p 1 0 0
chr11:308199|308401 hsa-miR-4446-3p 1 0 0
chr11:308199|308401 hsa-miR-149-3p 1 0 0
chr11:308199|308401 hsa-miR-6802-5p 1 0 0
chr11:308199|308401 hsa-miR-3074-5p 0 1 0
chr11:308199|308401 hsa-miR-483-5p 1 0 0
chr11:308199|308401 hsa-miR-1207-5p 1 0 0
chr11:308199|308401 hsa-miR-1233-5p 1 0 0
chr11:308199|308401 hsa-miR-1273h-5p 1 1 0
chr11:308199|308401 hsa-miR-3689b-3p 0 1 0
chr11:308199|308401 hsa-miR-6778-5p 1 0 0
chr11:308199|308401 hsa-miR-6870-5p 1 1 0
chr11:308199|308401 hsa-miR-1343-5p 1 0 0
chr11:308199|308401 hsa-miR-6743-5p 1 0 0
chr11:308199|308401 hsa-miR-6752-5p 1 1 0
chr11:308199|308401 hsa-miR-6756-5p 1 0 0
chr11:308199|308401 hsa-miR-6803-5p 1 0 0
chr11:308199|308401 hsa-miR-11181-3p 1 0 0
chr11:308199|308401 hsa-miR-6779-5p 1 1 0
chr11:308199|308401 hsa-miR-6780a-5p 1 0 0
chr11:308199|308401 hsa-miR-6797-5p 1 0 0
chr11:308199|308401 hsa-miR-6808-5p 1 0 0
chr11:308199|308401 hsa-miR-4728-5p 1 0 0
chr11:308199|308401 hsa-miR-1237-5p 1 0 0
chr11:308199|308401 hsa-miR-328-5p 1 0 0
chr11:308199|308401 hsa-miR-6846-5p 1 0 0
chr11:308199|308401 hsa-miR-6848-5p 1 0 0
chr11:308199|308401 hsa-miR-6858-5p 1 1 0
chr11:308199|308401 hsa-miR-6885-5p 1 0 0
chr11:308199|308401 hsa-miR-6731-5p 1 1 0
chr11:308199|308401 hsa-miR-6856-5p 1 0 0
chr11:308199|308401 hsa-miR-3679-5p 1 0 0
chr11:308199|308401 hsa-miR-6849-5p 1 0 0
chr11:308199|308401 hsa-miR-4757-5p 1 0 0
chr11:308199|308401 hsa-miR-6715b-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr11:308199|308401
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWSLFNTLFMNT
Nucleotide Sequence ATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGTGCCCCACAACCCTGCTCCCCCGATGTCCACCGTGATCCACATCCGCAGCGAGACCTCCGTGCCTGACCATGTGGTCTGGTCCCTGTTCAACACCCTCTTCATGAACACC
CircID chr11:308199|308401
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MCKPSLLSTAASLPTTRCSRRSRKWLCWGCPTTLLPRCPP
Nucleotide Sequence TTGTGCAAACCTTCTCTCCTGTCAACAGCGGCCAGCCTCCCAACTACGAGATGCTCAAGGAGGAGCAGGAAGTGGCTATGCTGGGGGTGCCCCACAACCCTGCTCCCCCGATGTCCACCGTGA
CircID chr11:308199|308401
ORF Type ORF3
Protein Length 48
Nucleotide Length 147
Protein Sequence MKRVLNRDQTTWSGTEVSLRMWITVDIGGAGLWGTPSIATSCSSLSIS
Nucleotide Sequence ATGAAGAGGGTGTTGAACAGGGACCAGACCACATGGTCAGGCACGGAGGTCTCGCTGCGGATGTGGATCACGGTGGACATCGGGGGAGCAGGGTTGTGGGGCACCCCCAGCATAGCCACTTCCTGCTCCTCCTTGAGCATCTCGTAG
CircID chr11:308199|308401
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MVRHGGLAADVDHGGHRGSRVVGHPQHSHFLLLLEHLVVGRLAAVDRREGLHNV
Nucleotide Sequence ATGGTCAGGCACGGAGGTCTCGCTGCGGATGTGGATCACGGTGGACATCGGGGGAGCAGGGTTGTGGGGCACCCCCAGCATAGCCACTTCCTGCTCCTCCTTGAGCATCTCGTAGTTGGGAGGCTGGCCGCTGTTGACAGGAGAGAAGGTTTGCACAATGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab