CircRNA Information

General Information
circRNA Basic Information
CircID chr11:34097196|34099332
Strand +
CircType exon
Host Gene ENSG00000135387.18;
Algorism CIRI2;
Sequence CTCTGTTGGGTCTTGGGGGCCCTCCACGACCTCGTGGGGCTCCCCGTGGTCCACTCTGCCCAGAGCCTCGCTTGAAATTCTGCTGATATCCATCCCGTTGATAGCCAGAGTAATCCCGGGGAGCACTGAACTGAGACTGTGTATAACCACTGTTTGGAGTGTTAGAGAATGAAGGGCGGTAACCATCATATCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:34097196|34099332 hsa-miR-95-5p 0 0 1
chr11:34097196|34099332 hsa-miR-95-3p 0 0 1
chr11:34097196|34099332 hsa-miR-148a-5p 0 0 1
chr11:34097196|34099332 hsa-miR-148a-3p 0 0 1
chr11:34097196|34099332 hsa-miR-205-5p 0 0 1
chr11:34097196|34099332 hsa-miR-205-3p 0 0 1
chr11:34097196|34099332 hsa-miR-214-5p 0 0 1
chr11:34097196|34099332 hsa-miR-214-3p 0 0 1
chr11:34097196|34099332 hsa-miR-141-5p 0 0 1
chr11:34097196|34099332 hsa-miR-141-3p 0 0 1
chr11:34097196|34099332 hsa-miR-152-5p 0 0 1
chr11:34097196|34099332 hsa-miR-152-3p 0 0 1
chr11:34097196|34099332 hsa-miR-149-5p 0 0 1
chr11:34097196|34099332 hsa-miR-149-3p 0 0 1
chr11:34097196|34099332 hsa-miR-200a-5p 0 0 1
chr11:34097196|34099332 hsa-miR-200a-3p 0 0 1
chr11:34097196|34099332 hsa-miR-326 0 0 1
chr11:34097196|34099332 hsa-miR-148b-5p 0 0 1
chr11:34097196|34099332 hsa-miR-148b-3p 0 0 1
chr11:34097196|34099332 hsa-miR-498-5p 0 0 1
chr11:34097196|34099332 hsa-miR-498-3p 0 0 1
chr11:34097196|34099332 hsa-miR-612 0 1 1
chr11:34097196|34099332 hsa-miR-1298-5p 0 0 1
chr11:34097196|34099332 hsa-miR-1298-3p 0 0 1
chr11:34097196|34099332 hsa-miR-760 1 1 1
chr11:34097196|34099332 hsa-miR-922 0 0 1
chr11:34097196|34099332 hsa-miR-939-5p 0 0 1
chr11:34097196|34099332 hsa-miR-939-3p 0 0 1
chr11:34097196|34099332 hsa-miR-1249-5p 0 0 1
chr11:34097196|34099332 hsa-miR-1249-3p 0 0 1
chr11:34097196|34099332 hsa-miR-1272 0 0 1
chr11:34097196|34099332 hsa-miR-1322 0 0 1
chr11:34097196|34099332 hsa-miR-140-5p 0 1 1
chr11:34097196|34099332 hsa-miR-1225-3p 0 0 1
chr11:34097196|34099332 hsa-miR-296-5p 0 0 1
chr11:34097196|34099332 hsa-miR-409-5p 0 0 1
chr11:34097196|34099332 hsa-miR-330-5p 0 0 1
chr11:34097196|34099332 hsa-miR-1285 0 0 1
chr11:34097196|34099332 hsa-miR-1185 0 0 1
chr11:34097196|34099332 hsa-miR-608 1 0 0
chr11:34097196|34099332 hsa-miR-638 1 0 0
chr11:34097196|34099332 hsa-miR-298 1 0 0
chr11:34097196|34099332 hsa-miR-3188 1 1 0
chr11:34097196|34099332 hsa-miR-4507 1 0 0
chr11:34097196|34099332 hsa-miR-4651 1 0 0
chr11:34097196|34099332 hsa-miR-4741 1 0 0
chr11:34097196|34099332 hsa-miR-4791 0 1 0
chr11:34097196|34099332 hsa-miR-4794 0 1 0
chr11:34097196|34099332 hsa-miR-6860 0 1 0
chr11:34097196|34099332 hsa-miR-3150a-3p 1 1 0
chr11:34097196|34099332 hsa-miR-6728-5p 1 0 0
chr11:34097196|34099332 hsa-miR-6515-5p 0 1 0
chr11:34097196|34099332 hsa-miR-6757-5p 1 0 0
chr11:34097196|34099332 hsa-miR-197-5p 0 1 0
chr11:34097196|34099332 hsa-miR-6732-5p 1 0 0
chr11:34097196|34099332 hsa-miR-2467-5p 0 1 0
chr11:34097196|34099332 hsa-miR-6827-5p 0 1 0
chr11:34097196|34099332 hsa-miR-6798-5p 1 0 0
chr11:34097196|34099332 hsa-miR-6782-5p 1 0 0
chr11:34097196|34099332 hsa-miR-6784-5p 1 0 0
chr11:34097196|34099332 hsa-miR-3074-3p 0 1 0
chr11:34097196|34099332 hsa-miR-4800-5p 0 1 0
chr11:34097196|34099332 hsa-miR-7160-3p 0 1 0
chr11:34097196|34099332 hsa-miR-5000-5p 0 1 0
chr11:34097196|34099332 hsa-miR-216a-3p 1 0 0
chr11:34097196|34099332 hsa-miR-431-3p 0 1 0
chr11:34097196|34099332 hsa-miR-1343-5p 1 1 0
chr11:34097196|34099332 hsa-miR-5001-5p 1 0 0
chr11:34097196|34099332 hsa-miR-3620-5p 1 0 0
chr11:34097196|34099332 hsa-miR-5189-5p 0 1 0
chr11:34097196|34099332 hsa-miR-10396a-5p 1 0 0
chr11:34097196|34099332 hsa-miR-6777-5p 0 1 0
chr11:34097196|34099332 hsa-miR-6889-5p 0 1 0
chr11:34097196|34099332 hsa-miR-3187-5p 0 1 0
chr11:34097196|34099332 hsa-miR-4723-5p 1 1 0
chr11:34097196|34099332 hsa-miR-6511a-5p 1 0 0
chr11:34097196|34099332 hsa-miR-3940-5p 1 0 0
chr11:34097196|34099332 hsa-miR-3679-5p 0 1 0
chr11:34097196|34099332 hsa-miR-6791-5p 1 0 0
chr11:34097196|34099332 hsa-miR-487b-5p 0 1 0
chr11:34097196|34099332 hsa-miR-3619-5p 1 0 0
chr11:34097196|34099332 hsa-miR-487a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:34097196|34099332
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MPRASLEILLISIPLIARVIPGSTELRLCITTVWSVRE
Nucleotide Sequence CTGCCCAGAGCCTCGCTTGAAATTCTGCTGATATCCATCCCGTTGATAGCCAGAGTAATCCCGGGGAGCACTGAACTGAGACTGTGTATAACCACTGTTTGGAGTGTTAGAGAATGA
CircID chr11:34097196|34099332
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence LLGLGGPPRPRGAPRGPLCPEPRLKFC
Nucleotide Sequence CTGTTGGGTCTTGGGGGCCCTCCACGACCTCGTGGGGCTCCCCGTGGTCCACTCTGCCCAGAGCCTCGCTTGAAATTCTGCTGA
CircID chr11:34097196|34099332
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MMVTALHSLTLQTVVIHSLSSVLPGITLAINGMDISRISSEALGRVDHGEPHEVVEGPQDPTE
Nucleotide Sequence ATGATGGTTACCGCCCTTCATTCTCTAACACTCCAAACAGTGGTTATACACAGTCTCAGTTCAGTGCTCCCCGGGATTACTCTGGCTATCAACGGGATGGATATCAGCAGAATTTCAAGCGAGGCTCTGGGCAGAGTGGACCACGGGGAGCCCCACGAGGTCGTGGAGGGCCCCCAAGACCCAACAGAG
CircID chr11:34097196|34099332
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MMVTALHSLTLQTVVIHSLSSVLPGITLAINGMDISRISSEALGRVDHGEPHETE
Nucleotide Sequence ATGATGGTTACCGCCCTTCATTCTCTAACACTCCAAACAGTGGTTATACACAGTCTCAGTTCAGTGCTCCCCGGGATTACTCTGGCTATCAACGGGATGGATATCAGCAGAATTTCAAGCGAGGCTCTGGGCAGAGTGGACCACGGGGAGCCCCACGAGACAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab