CircRNA Information

General Information
circRNA Basic Information
CircID chr11:35228592|35228844
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCTGAATCAGAAAACTCTAGAGTTGGAGCCCAGGATCTGTGGCTTCTCTGCACAGTCAAATTTGCAACCCCTCAGGGGCTTCTCTGCACAGTCAAGTTTGCAAACCAGCAACTAAGACTCCAGGAAGCCGGTGTTATTATTATATTCTCTATATTCCAAGTGAAGAAACCTTGGGGATCAGAAAATTCAGTAACTTCCCCCAAGTAACTCAGCAAGTAAGAAAGAGGATTCAAACCCTGGTCTGTCTGACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:35228592|35228844 hsa-miR-214-5p 0 0 1
chr11:35228592|35228844 hsa-miR-214-3p 0 0 1
chr11:35228592|35228844 hsa-miR-374a-5p 0 0 1
chr11:35228592|35228844 hsa-miR-374a-3p 0 0 1
chr11:35228592|35228844 hsa-miR-412-5p 0 0 1
chr11:35228592|35228844 hsa-miR-412-3p 0 0 1
chr11:35228592|35228844 hsa-miR-527 0 0 1
chr11:35228592|35228844 hsa-miR-618 0 0 1
chr11:35228592|35228844 hsa-miR-625-5p 0 0 1
chr11:35228592|35228844 hsa-miR-625-3p 0 0 1
chr11:35228592|35228844 hsa-miR-890 0 0 1
chr11:35228592|35228844 hsa-miR-374b-5p 0 0 1
chr11:35228592|35228844 hsa-miR-374b-3p 0 0 1
chr11:35228592|35228844 hsa-miR-922 0 0 1
chr11:35228592|35228844 hsa-miR-924 0 0 1
chr11:35228592|35228844 hsa-miR-943 0 0 1
chr11:35228592|35228844 hsa-miR-1275 0 0 1
chr11:35228592|35228844 hsa-miR-1324 0 0 1
chr11:35228592|35228844 hsa-miR-1289 0 0 1
chr11:35228592|35228844 hsa-miR-423-5p 0 0 1
chr11:35228592|35228844 hsa-miR-628-5p 0 0 1
chr11:35228592|35228844 hsa-miR-518d-5p 0 0 1
chr11:35228592|35228844 hsa-miR-519b-5p 0 0 1
chr11:35228592|35228844 hsa-miR-519c-5p 0 0 1
chr11:35228592|35228844 hsa-miR-520c-5p 0 0 1
chr11:35228592|35228844 hsa-miR-125a-5p 0 0 1
chr11:35228592|35228844 hsa-miR-518a-5p 0 0 1
chr11:35228592|35228844 hsa-miR-516a-3p 0 0 1
chr11:35228592|35228844 hsa-miR-450b-5p 0 0 1
chr11:35228592|35228844 hsa-miR-369-3p 0 0 1
chr11:35228592|35228844 hsa-miR-125b 0 0 1
chr11:35228592|35228844 hsa-miR-138 0 0 1
chr11:35228592|35228844 hsa-miR-526a 0 0 1
chr11:35228592|35228844 hsa-miR-544b 0 1 0
chr11:35228592|35228844 hsa-miR-4309 0 1 0
chr11:35228592|35228844 hsa-miR-378g 0 1 0
chr11:35228592|35228844 hsa-miR-5087 0 1 0
chr11:35228592|35228844 hsa-miR-5194 0 1 0
chr11:35228592|35228844 hsa-miR-8077 1 0 0
chr11:35228592|35228844 hsa-miR-12119 1 1 0
chr11:35228592|35228844 hsa-miR-29b-1-5p 0 1 0
chr11:35228592|35228844 hsa-miR-6734-5p 1 0 0
chr11:35228592|35228844 hsa-miR-671-5p 1 1 0
chr11:35228592|35228844 hsa-miR-3150a-3p 1 0 0
chr11:35228592|35228844 hsa-miR-6881-3p 0 1 0
chr11:35228592|35228844 hsa-miR-3192-5p 1 0 0
chr11:35228592|35228844 hsa-miR-6796-5p 1 0 0
chr11:35228592|35228844 hsa-miR-1343-3p 0 1 0
chr11:35228592|35228844 hsa-miR-939-3p 0 1 0
chr11:35228592|35228844 hsa-miR-7109-5p 1 0 0
chr11:35228592|35228844 hsa-miR-1226-5p 1 0 0
chr11:35228592|35228844 hsa-miR-5187-3p 0 1 0
chr11:35228592|35228844 hsa-miR-4786-3p 0 1 0
chr11:35228592|35228844 hsa-miR-3678-3p 0 1 0
chr11:35228592|35228844 hsa-miR-1295b-3p 1 0 0
chr11:35228592|35228844 hsa-miR-6505-5p 0 1 0
chr11:35228592|35228844 hsa-miR-1207-5p 1 0 0
chr11:35228592|35228844 hsa-miR-6803-5p 1 0 0
chr11:35228592|35228844 hsa-miR-6842-5p 1 0 0
chr11:35228592|35228844 hsa-miR-6751-5p 1 0 0
chr11:35228592|35228844 hsa-miR-4685-5p 1 0 0
chr11:35228592|35228844 hsa-miR-6738-5p 1 0 0
chr11:35228592|35228844 hsa-miR-675-5p 1 1 0
chr11:35228592|35228844 hsa-miR-3198 0 1 0
chr11:35228592|35228844 hsa-miR-1914-3p 1 0 0
chr11:35228592|35228844 hsa-miR-3184-5p 1 0 0
chr11:35228592|35228844 hsa-miR-769-3p 1 0 0
chr11:35228592|35228844 hsa-miR-10400-3p 0 1 0
chr11:35228592|35228844 hsa-miR-6783-3p 1 1 0
chr11:35228592|35228844 hsa-miR-147b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr11:35228592|35228844
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence LLNQKTLELEPRICGFSAQSNLQPLRGFSAQSSLQTSN
Nucleotide Sequence CTGCTGAATCAGAAAACTCTAGAGTTGGAGCCCAGGATCTGTGGCTTCTCTGCACAGTCAAATTTGCAACCCCTCAGGGGCTTCTCTGCACAGTCAAGTTTGCAAACCAGCAACTAA

CircID chr11:35228592|35228844
ORF Type ORF2
Protein Length 68
Nucleotide Length 204
Protein Sequence MHSQICNPSGASLHSQVCKPATKTPGSRCYYYILYIPSEETLGIRKFSNFPQVTQQVRKRIQTLVCLT
Nucleotide Sequence CTGCACAGTCAAATTTGCAACCCCTCAGGGGCTTCTCTGCACAGTCAAGTTTGCAAACCAGCAACTAAGACTCCAGGAAGCCGGTGTTATTATTATATTCTCTATATTCCAAGTGAAGAAACCTTGGGGATCAGAAAATTCAGTAACTTCCCCCAAGTAACTCAGCAAGTAAGAAAGAGGATTCAAACCCTGGTCTGTCTGACT

CircID chr11:35228592|35228844
ORF Type ORF3
Protein Length 56
Nucleotide Length 171
Protein Sequence MWLLCTVKFATPQGLLCTVKFANQQLRLQEAGVIIIFSIFQVKKPWGSENSVTSPK
Nucleotide Sequence CTGTGGCTTCTCTGCACAGTCAAATTTGCAACCCCTCAGGGGCTTCTCTGCACAGTCAAGTTTGCAAACCAGCAACTAAGACTCCAGGAAGCCGGTGTTATTATTATATTCTCTATATTCCAAGTGAAGAAACCTTGGGGATCAGAAAATTCAGTAACTTCCCCCAAGTAA

CircID chr11:35228592|35228844
ORF Type ORF4
Protein Length 53
Nucleotide Length 162
Protein Sequence MNPLSYLLSYLGEVTEFSDPQGFFTWNIENIIITPASWSLSCWFANLTVQRSP
Nucleotide Sequence TTGAATCCTCTTTCTTACTTGCTGAGTTACTTGGGGGAAGTTACTGAATTTTCTGATCCCCAAGGTTTCTTCACTTGGAATATAGAGAATATAATAATAACACCGGCTTCCTGGAGTCTTAGTTGCTGGTTTGCAAACTTGACTGTGCAGAGAAGCCCCTGA

CircID chr11:35228592|35228844
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MLVCKLDCAEKPLRGCKFDCAEKPQILGSNSRVF
Nucleotide Sequence TTGCTGGTTTGCAAACTTGACTGTGCAGAGAAGCCCCTGAGGGGTTGCAAATTTGACTGTGCAGAGAAGCCACAGATCCTGGGCTCCAACTCTAGAGTTTTCTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites