CircRNA Information

General Information
circRNA Basic Information
CircID chr11:403657|404013
Strand +
CircType exon
Host Gene ENSG00000184363.8;
Algorism CIRI2;
Sequence CTCGGCTGGGGGCGACTTCTCACCCACGCTGCCCGGCAGCTTCTCGATCAGGTGGCTCACCACCTTCGTGGCTGTGGGAGGCCGGGGGTCAGTCTGCACCCCTACTCCTGGCCACCTGGGCACCTGGGGTCCCCTGCCTCCCCCAGGGAGCTGGACTGGCCCCAGTGGTCTGAAGCCCACACTTAAAGACAAAATTGACATGTGGGTCCAGCAGGGCAGGGACGAGGGGCTGCCCGACTCACACATCTCGTCCTTGTTCCTAGCGTTCCGAGACAGGTTTCGGATGAGGCCAGTCAGTGAGCGCAGCTGGTGGTGGTCGGCGGTCCTGACACGGTCTAGCAGGGGGTTCAGAATACG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:403657|404013 hsa-miR-22-5p 0 0 1
chr11:403657|404013 hsa-miR-22-3p 0 0 1
chr11:403657|404013 hsa-miR-370-5p 0 0 1
chr11:403657|404013 hsa-miR-370-3p 0 0 1
chr11:403657|404013 hsa-miR-511-5p 0 0 1
chr11:403657|404013 hsa-miR-511-3p 0 0 1
chr11:403657|404013 hsa-miR-193b-5p 0 0 1
chr11:403657|404013 hsa-miR-193b-3p 0 0 1
chr11:403657|404013 hsa-miR-595 0 0 1
chr11:403657|404013 hsa-miR-625-5p 0 0 1
chr11:403657|404013 hsa-miR-625-3p 0 0 1
chr11:403657|404013 hsa-miR-630 0 0 1
chr11:403657|404013 hsa-miR-637 0 0 1
chr11:403657|404013 hsa-miR-649 0 0 1
chr11:403657|404013 hsa-miR-650 0 0 1
chr11:403657|404013 hsa-miR-874-5p 0 0 1
chr11:403657|404013 hsa-miR-874-3p 0 0 1
chr11:403657|404013 hsa-miR-665 0 0 1
chr11:403657|404013 hsa-miR-940 0 1 1
chr11:403657|404013 hsa-miR-1226-5p 0 0 1
chr11:403657|404013 hsa-miR-1226-3p 0 0 1
chr11:403657|404013 hsa-miR-1287-5p 0 0 1
chr11:403657|404013 hsa-miR-1287-3p 0 0 1
chr11:403657|404013 hsa-miR-1253 0 0 1
chr11:403657|404013 hsa-miR-1262 0 0 1
chr11:403657|404013 hsa-miR-1275 0 0 1
chr11:403657|404013 hsa-miR-1827 0 0 1
chr11:403657|404013 hsa-miR-532-3p 0 0 1
chr11:403657|404013 hsa-miR-885-3p 0 1 1
chr11:403657|404013 hsa-miR-146b-3p 0 0 1
chr11:403657|404013 hsa-miR-361-3p 0 0 1
chr11:403657|404013 hsa-miR-188-3p 0 0 1
chr11:403657|404013 hsa-miR-576-3p 0 0 1
chr11:403657|404013 hsa-miR-1207-5p 0 0 1
chr11:403657|404013 hsa-miR-342-5p 0 0 1
chr11:403657|404013 hsa-miR-455-3p 0 0 1
chr11:403657|404013 hsa-miR-193a-3p 0 0 1
chr11:403657|404013 hsa-miR-369-5p 0 0 1
chr11:403657|404013 hsa-miR-220b 0 0 1
chr11:403657|404013 hsa-miR-1300 0 0 1
chr11:403657|404013 hsa-miR-638 1 0 0
chr11:403657|404013 hsa-miR-764 0 1 0
chr11:403657|404013 hsa-miR-1181 0 1 0
chr11:403657|404013 hsa-miR-3183 1 0 0
chr11:403657|404013 hsa-miR-3196 1 0 0
chr11:403657|404013 hsa-miR-4296 0 1 0
chr11:403657|404013 hsa-miR-4322 1 1 0
chr11:403657|404013 hsa-miR-4265 0 1 0
chr11:403657|404013 hsa-miR-3911 1 0 0
chr11:403657|404013 hsa-miR-4420 0 1 0
chr11:403657|404013 hsa-miR-4421 0 1 0
chr11:403657|404013 hsa-miR-4513 0 1 0
chr11:403657|404013 hsa-miR-5698 0 1 0
chr11:403657|404013 hsa-miR-6069 1 0 0
chr11:403657|404013 hsa-miR-8089 1 0 0
chr11:403657|404013 hsa-miR-4433b-3p 0 1 0
chr11:403657|404013 hsa-miR-3194-3p 0 1 0
chr11:403657|404013 hsa-miR-1273h-3p 0 1 0
chr11:403657|404013 hsa-miR-4726-3p 0 1 0
chr11:403657|404013 hsa-miR-4433a-3p 1 1 0
chr11:403657|404013 hsa-miR-6765-5p 1 0 0
chr11:403657|404013 hsa-miR-6836-3p 0 1 0
chr11:403657|404013 hsa-miR-7106-5p 1 0 0
chr11:403657|404013 hsa-miR-6825-5p 0 1 0
chr11:403657|404013 hsa-miR-210-5p 1 0 0
chr11:403657|404013 hsa-miR-3692-5p 0 1 0
chr11:403657|404013 hsa-miR-3622a-5p 0 1 0
chr11:403657|404013 hsa-miR-1227-5p 0 1 0
chr11:403657|404013 hsa-miR-6089 1 0 0
chr11:403657|404013 hsa-miR-1225-3p 1 0 0
chr11:403657|404013 hsa-miR-6807-5p 0 1 0
chr11:403657|404013 hsa-miR-6759-5p 0 1 0
chr11:403657|404013 hsa-miR-191-3p 0 1 0
chr11:403657|404013 hsa-miR-1915-5p 0 1 0
chr11:403657|404013 hsa-miR-6748-5p 0 1 0
chr11:403657|404013 hsa-miR-4655-3p 0 1 0
chr11:403657|404013 hsa-miR-615-5p 1 0 0
chr11:403657|404013 hsa-miR-6853-5p 0 1 0
chr11:403657|404013 hsa-miR-4640-5p 0 1 0
chr11:403657|404013 hsa-miR-4691-3p 0 1 0
chr11:403657|404013 hsa-miR-7113-3p 1 0 0
chr11:403657|404013 hsa-miR-6878-3p 0 1 0
chr11:403657|404013 hsa-miR-149-3p 1 0 0
chr11:403657|404013 hsa-miR-1304-3p 0 1 0
chr11:403657|404013 hsa-miR-6824-5p 1 0 0
chr11:403657|404013 hsa-miR-4640-3p 0 1 0
chr11:403657|404013 hsa-miR-6769a-3p 0 1 0
chr11:403657|404013 hsa-miR-339-5p 0 1 0
chr11:403657|404013 hsa-miR-6825-3p 0 1 0
chr11:403657|404013 hsa-miR-7112-5p 0 1 0
chr11:403657|404013 hsa-miR-6778-3p 0 1 0
chr11:403657|404013 hsa-miR-6818-5p 0 1 0
chr11:403657|404013 hsa-miR-4749-3p 0 1 0
chr11:403657|404013 hsa-miR-6795-3p 0 1 0
chr11:403657|404013 hsa-miR-6859-3p 0 1 0
chr11:403657|404013 hsa-miR-4750-3p 0 1 0
chr11:403657|404013 hsa-miR-4771 0 1 0
chr11:403657|404013 hsa-miR-4763-3p 1 1 0
chr11:403657|404013 hsa-miR-6865-5p 0 1 0
chr11:403657|404013 hsa-miR-6870-5p 0 1 0
chr11:403657|404013 hsa-miR-1343-5p 1 0 0
chr11:403657|404013 hsa-miR-6743-5p 1 0 0
chr11:403657|404013 hsa-miR-6815-5p 0 1 0
chr11:403657|404013 hsa-miR-6722-3p 1 1 0
chr11:403657|404013 hsa-miR-7111-5p 1 1 0
chr11:403657|404013 hsa-miR-1909-3p 1 1 0
chr11:403657|404013 hsa-miR-328-5p 1 0 0
chr11:403657|404013 hsa-miR-4632-5p 1 1 0
chr11:403657|404013 hsa-miR-4649-5p 0 1 0
chr11:403657|404013 hsa-miR-4726-5p 0 1 0
chr11:403657|404013 hsa-miR-4745-5p 1 0 0
chr11:403657|404013 hsa-miR-3187-5p 0 1 0
chr11:403657|404013 hsa-miR-4723-5p 0 1 0
chr11:403657|404013 hsa-miR-6845-5p 0 1 0
chr11:403657|404013 hsa-miR-3085-5p 1 0 0
chr11:403657|404013 hsa-miR-6799-3p 0 1 0
chr11:403657|404013 hsa-miR-4665-5p 0 1 0
chr11:403657|404013 hsa-miR-6877-3p 0 1 0
chr11:403657|404013 hsa-miR-6724-5p 1 0 0
chr11:403657|404013 hsa-miR-6791-5p 1 1 0
chr11:403657|404013 hsa-miR-6762-5p 0 1 0
chr11:403657|404013 hsa-miR-6893-3p 0 1 0
chr11:403657|404013 hsa-miR-6810-3p 0 1 0
chr11:403657|404013 hsa-miR-5195-3p 1 1 0
chr11:403657|404013 hsa-miR-3922-3p 0 1 0
chr11:403657|404013 hsa-miR-6855-3p 0 1 0
chr11:403657|404013 hsa-miR-10399-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:403657|404013
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MHPYSWPPGHLGSPASPRELDWPQWSEAHT
Nucleotide Sequence CTGCACCCCTACTCCTGGCCACCTGGGCACCTGGGGTCCCCTGCCTCCCCCAGGGAGCTGGACTGGCCCCAGTGGTCTGAAGCCCACACTTAA
CircID chr11:403657|404013
ORF Type ORF2
Protein Length 109
Nucleotide Length 327
Protein Sequence MPGSFSIRWLTTFVAVGGRGSVCTPTPGHLGTWGPLPPPGSWTGPSGLKPTLKDKIDMWVQQGRDEGLPDSHISSLFLAFRDRFRMRPVSERSWWWSAVLTRSSRGFRI
Nucleotide Sequence CTGCCCGGCAGCTTCTCGATCAGGTGGCTCACCACCTTCGTGGCTGTGGGAGGCCGGGGGTCAGTCTGCACCCCTACTCCTGGCCACCTGGGCACCTGGGGTCCCCTGCCTCCCCCAGGGAGCTGGACTGGCCCCAGTGGTCTGAAGCCCACACTTAAAGACAAAATTGACATGTGGGTCCAGCAGGGCAGGGACGAGGGGCTGCCCGACTCACACATCTCGTCCTTGTTCCTAGCGTTCCGAGACAGGTTTCGGATGAGGCCAGTCAGTGAGCGCAGCTGGTGGTGGTCGGCGGTCCTGACACGGTCTAGCAGGGGGTTCAGAATA
CircID chr11:403657|404013
ORF Type ORF3
Protein Length 55
Nucleotide Length 168
Protein Sequence MGATSHPRCPAASRSGGSPPSWLWEAGGQSAPLLLATWAPGVPCLPQGAGLAPVV
Nucleotide Sequence CTGGGGGCGACTTCTCACCCACGCTGCCCGGCAGCTTCTCGATCAGGTGGCTCACCACCTTCGTGGCTGTGGGAGGCCGGGGGTCAGTCTGCACCCCTACTCCTGGCCACCTGGGCACCTGGGGTCCCCTGCCTCCCCCAGGGAGCTGGACTGGCCCCAGTGGTCTGA
CircID chr11:403657|404013
ORF Type ORF4
Protein Length 117
Nucleotide Length 351
Protein Sequence MNPLLDRVRTADHHQLRSLTGLIRNLSRNARNKDEMCESGSPSSLPCWTHMSILSLSVGFRPLGPVQLPGGGRGPQVPRWPGVGVQTDPRPPTATKVVSHLIEKLPGSVGEKSPPAE
Nucleotide Sequence CTGAACCCCCTGCTAGACCGTGTCAGGACCGCCGACCACCACCAGCTGCGCTCACTGACTGGCCTCATCCGAAACCTGTCTCGGAACGCTAGGAACAAGGACGAGATGTGTGAGTCGGGCAGCCCCTCGTCCCTGCCCTGCTGGACCCACATGTCAATTTTGTCTTTAAGTGTGGGCTTCAGACCACTGGGGCCAGTCCAGCTCCCTGGGGGAGGCAGGGGACCCCAGGTGCCCAGGTGGCCAGGAGTAGGGGTGCAGACTGACCCCCGGCCTCCCACAGCCACGAAGGTGGTGAGCCACCTGATCGAGAAGCTGCCGGGCAGCGTGGGTGAGAAGTCGCCCCCAGCCGAG
CircID chr11:403657|404013
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MASSETCLGTLGTRTRCVSRAAPRPCPAGPTCQFCL
Nucleotide Sequence CTGGCCTCATCCGAAACCTGTCTCGGAACGCTAGGAACAAGGACGAGATGTGTGAGTCGGGCAGCCCCTCGTCCCTGCCCTGCTGGACCCACATGTCAATTTTGTCTTTAA
CircID chr11:403657|404013
ORF Type ORF6
Protein Length 41
Nucleotide Length 126
Protein Sequence MLDPHVNFVFKCGLQTTGASPAPWGRQGTPGAQVARSRGAD
Nucleotide Sequence CTGCTGGACCCACATGTCAATTTTGTCTTTAAGTGTGGGCTTCAGACCACTGGGGCCAGTCCAGCTCCCTGGGGGAGGCAGGGGACCCCAGGTGCCCAGGTGGCCAGGAGTAGGGGTGCAGACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab