CircRNA Information

General Information
circRNA Basic Information
CircID chr11:428610|428799
Strand +
CircType exon
Host Gene ENSG00000185101.11;
Algorism CIRI2;
Sequence TGCCCCGACTACAAGCTCCGGCCATACCAGCACTCCTACCTACGCAGCACCGTCATCCTCGTCCTGACCCTGCTCATGGTACGCAGGGGACACCGCGGTGGGGCTGGAGACCCGGGCTGCATGCCCTCCCCGGCCCCCGCCCACCACAGCTGTCCCGCAGATCTGCCTCATGATCGGCATGGCCCACGTC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:428610|428799 hsa-miR-196b-5p 0 0 1
chr11:428610|428799 hsa-miR-196b-3p 0 0 1
chr11:428610|428799 hsa-miR-766-5p 0 0 1
chr11:428610|428799 hsa-miR-766-3p 0 0 1
chr11:428610|428799 hsa-miR-541-5p 0 0 1
chr11:428610|428799 hsa-miR-541-3p 0 0 1
chr11:428610|428799 hsa-miR-1203 0 0 1
chr11:428610|428799 hsa-miR-1250-5p 0 0 1
chr11:428610|428799 hsa-miR-1250-3p 0 0 1
chr11:428610|428799 hsa-miR-1827 0 0 1
chr11:428610|428799 hsa-miR-512-3p 0 1 1
chr11:428610|428799 hsa-miR-654-5p 1 1 1
chr11:428610|428799 hsa-miR-331-3p 0 0 1
chr11:428610|428799 hsa-miR-1280 0 0 1
chr11:428610|428799 hsa-miR-138 0 0 1
chr11:428610|428799 hsa-miR-196a 0 0 1
chr11:428610|428799 hsa-miR-663 0 0 1
chr11:428610|428799 hsa-miR-638 1 0 0
chr11:428610|428799 hsa-miR-661 1 1 0
chr11:428610|428799 hsa-miR-663a 1 1 0
chr11:428610|428799 hsa-miR-762 1 0 0
chr11:428610|428799 hsa-miR-1268a 1 0 0
chr11:428610|428799 hsa-miR-3131 1 0 0
chr11:428610|428799 hsa-miR-3141 1 0 0
chr11:428610|428799 hsa-miR-3193 1 1 0
chr11:428610|428799 hsa-miR-4322 1 0 0
chr11:428610|428799 hsa-miR-4323 0 1 0
chr11:428610|428799 hsa-miR-4253 0 1 0
chr11:428610|428799 hsa-miR-1268b 1 0 0
chr11:428610|428799 hsa-miR-4430 1 0 0
chr11:428610|428799 hsa-miR-4466 1 0 0
chr11:428610|428799 hsa-miR-4486 1 0 0
chr11:428610|428799 hsa-miR-2392 1 0 0
chr11:428610|428799 hsa-miR-4533 1 0 0
chr11:428610|428799 hsa-miR-1587 1 0 0
chr11:428610|428799 hsa-miR-4647 1 0 0
chr11:428610|428799 hsa-miR-4651 1 0 0
chr11:428610|428799 hsa-miR-4734 1 1 0
chr11:428610|428799 hsa-miR-4739 1 0 0
chr11:428610|428799 hsa-miR-5090 1 0 0
chr11:428610|428799 hsa-miR-5787 1 0 0
chr11:428610|428799 hsa-miR-138-5p 1 0 0
chr11:428610|428799 hsa-miR-4433b-3p 1 1 0
chr11:428610|428799 hsa-miR-128-1-5p 1 0 0
chr11:428610|428799 hsa-miR-504-3p 1 0 0
chr11:428610|428799 hsa-miR-6765-5p 1 0 0
chr11:428610|428799 hsa-miR-6861-5p 1 0 0
chr11:428610|428799 hsa-miR-6825-5p 0 1 0
chr11:428610|428799 hsa-miR-6894-5p 1 0 0
chr11:428610|428799 hsa-miR-6510-5p 0 1 0
chr11:428610|428799 hsa-miR-6089 1 0 0
chr11:428610|428799 hsa-miR-6741-5p 1 0 0
chr11:428610|428799 hsa-miR-6721-5p 1 0 0
chr11:428610|428799 hsa-miR-1178-5p 0 1 0
chr11:428610|428799 hsa-miR-4655-5p 1 0 0
chr11:428610|428799 hsa-miR-4761-3p 0 1 0
chr11:428610|428799 hsa-miR-3189-5p 0 1 0
chr11:428610|428799 hsa-miR-7108-5p 1 0 0
chr11:428610|428799 hsa-miR-6829-5p 1 0 0
chr11:428610|428799 hsa-miR-6821-5p 1 0 0
chr11:428610|428799 hsa-miR-6850-5p 1 0 0
chr11:428610|428799 hsa-miR-6786-5p 1 0 0
chr11:428610|428799 hsa-miR-1226-5p 1 1 0
chr11:428610|428799 hsa-miR-6853-5p 1 0 0
chr11:428610|428799 hsa-miR-1229-5p 1 0 0
chr11:428610|428799 hsa-miR-4640-5p 1 0 0
chr11:428610|428799 hsa-miR-1908-5p 0 1 0
chr11:428610|428799 hsa-miR-1228-5p 1 1 0
chr11:428610|428799 hsa-miR-6771-5p 1 0 0
chr11:428610|428799 hsa-miR-6823-5p 1 0 0
chr11:428610|428799 hsa-miR-92b-5p 1 0 0
chr11:428610|428799 hsa-miR-3677-3p 1 0 0
chr11:428610|428799 hsa-miR-4743-5p 1 0 0
chr11:428610|428799 hsa-miR-4787-5p 0 1 0
chr11:428610|428799 hsa-miR-6781-5p 1 1 0
chr11:428610|428799 hsa-miR-7112-5p 1 0 0
chr11:428610|428799 hsa-let-7c-5p 0 1 0
chr11:428610|428799 hsa-let-7e-5p 0 1 0
chr11:428610|428799 hsa-miR-4758-3p 0 1 0
chr11:428610|428799 hsa-miR-4746-3p 1 0 0
chr11:428610|428799 hsa-miR-3940-3p 0 1 0
chr11:428610|428799 hsa-miR-6872-3p 0 1 0
chr11:428610|428799 hsa-miR-6508-3p 0 1 0
chr11:428610|428799 hsa-miR-4763-3p 1 0 0
chr11:428610|428799 hsa-miR-6769b-5p 1 0 0
chr11:428610|428799 hsa-miR-6787-5p 0 1 0
chr11:428610|428799 hsa-miR-6816-5p 1 0 0
chr11:428610|428799 hsa-miR-6775-5p 1 0 0
chr11:428610|428799 hsa-miR-6743-5p 1 0 0
chr11:428610|428799 hsa-miR-6756-5p 1 0 0
chr11:428610|428799 hsa-miR-6803-5p 1 0 0
chr11:428610|428799 hsa-miR-10401-5p 1 0 0
chr11:428610|428799 hsa-miR-6751-5p 1 0 0
chr11:428610|428799 hsa-miR-6879-5p 1 0 0
chr11:428610|428799 hsa-miR-3620-5p 1 0 0
chr11:428610|428799 hsa-miR-4728-5p 0 1 0
chr11:428610|428799 hsa-miR-5196-5p 1 0 0
chr11:428610|428799 hsa-miR-6862-5p 0 1 0
chr11:428610|428799 hsa-miR-10396a-5p 1 0 0
chr11:428610|428799 hsa-miR-10396b-5p 1 1 0
chr11:428610|428799 hsa-miR-1237-5p 1 0 0
chr11:428610|428799 hsa-miR-1909-3p 1 0 0
chr11:428610|428799 hsa-miR-328-5p 1 0 0
chr11:428610|428799 hsa-miR-4632-5p 1 0 0
chr11:428610|428799 hsa-miR-4649-5p 1 0 0
chr11:428610|428799 hsa-miR-4726-5p 1 0 0
chr11:428610|428799 hsa-miR-6729-5p 1 0 0
chr11:428610|428799 hsa-miR-6777-5p 0 1 0
chr11:428610|428799 hsa-miR-6846-5p 1 1 0
chr11:428610|428799 hsa-miR-6848-5p 1 1 0
chr11:428610|428799 hsa-miR-6883-5p 0 1 0
chr11:428610|428799 hsa-miR-6889-5p 0 1 0
chr11:428610|428799 hsa-miR-939-5p 1 0 0
chr11:428610|428799 hsa-miR-4758-5p 1 0 0
chr11:428610|428799 hsa-miR-6511a-5p 0 1 0
chr11:428610|428799 hsa-miR-6785-5p 0 1 0
chr11:428610|428799 hsa-miR-6724-5p 1 0 0
chr11:428610|428799 hsa-miR-6762-5p 1 0 0
chr11:428610|428799 hsa-miR-6810-3p 0 1 0
chr11:428610|428799 hsa-miR-10392-3p 0 1 0
chr11:428610|428799 hsa-miR-6512-3p 0 1 0
chr11:428610|428799 hsa-miR-126-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr11:428610|428799
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MTLLMVRRGHRGGAGDPGCMPSPAPAHHSCPADLPHDRHGPR
Nucleotide Sequence CTGACCCTGCTCATGGTACGCAGGGGACACCGCGGTGGGGCTGGAGACCCGGGCTGCATGCCCTCCCCGGCCCCCGCCCACCACAGCTGTCCCGCAGATCTGCCTCATGATCGGCATGGCCCACGT
CircID chr11:428610|428799
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence METRAACPPRPPPTTAVPQICLMIGMAHV
Nucleotide Sequence CTGGAGACCCGGGCTGCATGCCCTCCCCGGCCCCCGCCCACCACAGCTGTCCCGCAGATCTGCCTCATGATCGGCATGGCCCACGTC
CircID chr11:428610|428799
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MRDSCGGRGPGRACSPGLQPHRGVPCVP
Nucleotide Sequence CTGCGGGACAGCTGTGGTGGGCGGGGGCCGGGGAGGGCATGCAGCCCGGGTCTCCAGCCCCACCGCGGTGTCCCCTGCGTACCATGA
CircID chr11:428610|428799
ORF Type ORF4
Protein Length 46
Nucleotide Length 141
Protein Sequence MPIMRQICGTAVVGGGRGGHAARVSSPTAVSPAYHEQGQDEDDGAA
Nucleotide Sequence ATGCCGATCATGAGGCAGATCTGCGGGACAGCTGTGGTGGGCGGGGGCCGGGGAGGGCATGCAGCCCGGGTCTCCAGCCCCACCGCGGTGTCCCCTGCGTACCATGAGCAGGGTCAGGACGAGGATGACGGTGCTGCGTAG
CircID chr11:428610|428799
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MWWAGAGEGMQPGSPAPPRCPLRTMSRVRTRMTVLRR
Nucleotide Sequence CTGTGGTGGGCGGGGGCCGGGGAGGGCATGCAGCCCGGGTCTCCAGCCCCACCGCGGTGTCCCCTGCGTACCATGAGCAGGGTCAGGACGAGGATGACGGTGCTGCGTAGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab