CircRNA Information

General Information
circRNA Basic Information
CircID chr11:43443344|43443474
Strand +
CircType exon
Host Gene ENSG00000052841.13;
Algorism CIRI2;
Sequence GCCGCCCTTTCATCTCTAGTGCACCCCCAAAGCCTTCCAAAGGCCATGCCTGTTGAAATTCATCCACCAAAGCCAGTATTTCTTCTGACATTTTGGTTTCATCTGAATTCTCCATCTCATCAGAACCATTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:43443344|43443474 hsa-miR-200b-5p 0 0 1
chr11:43443344|43443474 hsa-miR-200b-3p 0 0 1
chr11:43443344|43443474 hsa-miR-143-5p 0 0 1
chr11:43443344|43443474 hsa-miR-143-3p 0 0 1
chr11:43443344|43443474 hsa-miR-200c-5p 0 0 1
chr11:43443344|43443474 hsa-miR-200c-3p 0 0 1
chr11:43443344|43443474 hsa-miR-429 0 0 1
chr11:43443344|43443474 hsa-miR-488-5p 0 0 1
chr11:43443344|43443474 hsa-miR-488-3p 0 0 1
chr11:43443344|43443474 hsa-miR-193b-5p 0 0 1
chr11:43443344|43443474 hsa-miR-193b-3p 0 0 1
chr11:43443344|43443474 hsa-miR-421 0 0 1
chr11:43443344|43443474 hsa-miR-892b 0 0 1
chr11:43443344|43443474 hsa-miR-1305 0 0 1
chr11:43443344|43443474 hsa-miR-1255a 0 0 1
chr11:43443344|43443474 hsa-miR-1275 0 0 1
chr11:43443344|43443474 hsa-miR-342-5p 0 0 1
chr11:43443344|43443474 hsa-miR-193a-3p 0 0 1
chr11:43443344|43443474 hsa-miR-1255b 0 0 1
chr11:43443344|43443474 hsa-miR-9 0 0 1
chr11:43443344|43443474 hsa-miR-608 1 0 0
chr11:43443344|43443474 hsa-miR-760 1 0 0
chr11:43443344|43443474 hsa-miR-1182 1 0 0
chr11:43443344|43443474 hsa-miR-1262 0 1 0
chr11:43443344|43443474 hsa-miR-2861 1 0 0
chr11:43443344|43443474 hsa-miR-3188 1 0 0
chr11:43443344|43443474 hsa-miR-4253 1 0 0
chr11:43443344|43443474 hsa-miR-3916 0 1 0
chr11:43443344|43443474 hsa-miR-4502 0 1 0
chr11:43443344|43443474 hsa-miR-4651 1 0 0
chr11:43443344|43443474 hsa-miR-4698 0 1 0
chr11:43443344|43443474 hsa-miR-4721 1 0 0
chr11:43443344|43443474 hsa-miR-5572 1 0 0
chr11:43443344|43443474 hsa-miR-5681a 0 1 0
chr11:43443344|43443474 hsa-miR-6088 0 1 0
chr11:43443344|43443474 hsa-miR-6125 1 0 0
chr11:43443344|43443474 hsa-miR-504-3p 1 0 0
chr11:43443344|43443474 hsa-miR-6747-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6894-5p 1 0 0
chr11:43443344|43443474 hsa-miR-4687-3p 1 0 0
chr11:43443344|43443474 hsa-miR-8071 1 0 0
chr11:43443344|43443474 hsa-miR-6757-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6880-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6772-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6732-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6782-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6835-5p 1 0 0
chr11:43443344|43443474 hsa-miR-4690-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6749-5p 1 0 0
chr11:43443344|43443474 hsa-miR-4787-5p 1 0 0
chr11:43443344|43443474 hsa-miR-193a-5p 1 0 0
chr11:43443344|43443474 hsa-miR-7112-5p 1 0 0
chr11:43443344|43443474 hsa-miR-7158-3p 1 0 0
chr11:43443344|43443474 hsa-miR-1233-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6769b-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6752-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6803-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6842-5p 1 0 0
chr11:43443344|43443474 hsa-miR-7110-5p 1 1 0
chr11:43443344|43443474 hsa-miR-6751-5p 1 1 0
chr11:43443344|43443474 hsa-miR-328-5p 1 0 0
chr11:43443344|43443474 hsa-miR-4697-5p 1 0 0
chr11:43443344|43443474 hsa-miR-4723-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6885-5p 1 0 0
chr11:43443344|43443474 hsa-miR-4665-5p 1 0 0
chr11:43443344|43443474 hsa-miR-6785-5p 1 0 0
chr11:43443344|43443474 hsa-miR-3085-3p 1 0 0
chr11:43443344|43443474 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr11:43443344|43443474
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MPVEIHPPKPVFLLTFWFHLNSPSHQNH
Nucleotide Sequence ATGCCTGTTGAAATTCATCCACCAAAGCCAGTATTTCTTCTGACATTTTGGTTTCATCTGAATTCTCCATCTCATCAGAACCAT

CircID chr11:43443344|43443474
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MENSDETKMSEEILALVDEFQQAWPLEGFGGALEMKGR
Nucleotide Sequence ATGGAGAATTCAGATGAAACCAAAATGTCAGAAGAAATACTGGCTTTGGTGGATGAATTTCAACAGGCATGGCCTTTGGAAGGCTTTGGGGGTGCACTAGAGATGAAAGGGCGG

CircID chr11:43443344|43443474
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MVLMRWRIQMKPKCQKKYWLWWMNFNRHGLWKALGVH
Nucleotide Sequence ATGGTTCTGATGAGATGGAGAATTCAGATGAAACCAAAATGTCAGAAGAAATACTGGCTTTGGTGGATGAATTTCAACAGGCATGGCCTTTGGAAGGCTTTGGGGGTGCACTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites