CircRNA Information

General Information
circRNA Basic Information
CircID chr11:43447337|43447610
Strand +
CircType exon
Host Gene ENSG00000052841.13;
Algorism CIRI2;
Sequence CTGGTATTATTGGCATTTTGGGCTGGATAATTTTTTGAGGGACCTGTCCTGTGCATTGGAGGGTGTTTAGCATCATCTTTGGCCTTCACCCACTGGATGGTGGTAGCACTGTTCCCCAGATATAACAACAAAAATGTCTCCAGATATTGCCAAATGTCCACACCCAGTAGAGAGAACCACTACTATAAAGAAGAGCAGCAGGGAGTAATGATGTTAATGAAAGATTATCATCTCCTCCCAGCCCCCACCACACCACCACAGTCCAAGAACCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:43447337|43447610 hsa-miR-96-5p 0 0 1
chr11:43447337|43447610 hsa-miR-96-3p 0 0 1
chr11:43447337|43447610 hsa-miR-182-5p 0 0 1
chr11:43447337|43447610 hsa-miR-182-3p 0 0 1
chr11:43447337|43447610 hsa-miR-143-5p 0 0 1
chr11:43447337|43447610 hsa-miR-143-3p 0 0 1
chr11:43447337|43447610 hsa-miR-370-5p 0 0 1
chr11:43447337|43447610 hsa-miR-370-3p 0 0 1
chr11:43447337|43447610 hsa-miR-432-5p 0 0 1
chr11:43447337|43447610 hsa-miR-432-3p 0 0 1
chr11:43447337|43447610 hsa-miR-609 0 0 1
chr11:43447337|43447610 hsa-miR-637 0 0 1
chr11:43447337|43447610 hsa-miR-1271-5p 0 0 1
chr11:43447337|43447610 hsa-miR-1271-3p 0 0 1
chr11:43447337|43447610 hsa-miR-765 0 0 1
chr11:43447337|43447610 hsa-miR-541-5p 0 0 1
chr11:43447337|43447610 hsa-miR-541-3p 0 0 1
chr11:43447337|43447610 hsa-miR-1262 0 0 1
chr11:43447337|43447610 hsa-miR-1288-5p 0 0 1
chr11:43447337|43447610 hsa-miR-1288-3p 0 0 1
chr11:43447337|43447610 hsa-miR-1322 0 0 1
chr11:43447337|43447610 hsa-miR-1825 0 0 1
chr11:43447337|43447610 hsa-miR-140-5p 0 0 1
chr11:43447337|43447610 hsa-miR-199a-5p 0 0 1
chr11:43447337|43447610 hsa-miR-654-5p 0 0 1
chr11:43447337|43447610 hsa-miR-876-3p 0 0 1
chr11:43447337|43447610 hsa-miR-1244 0 0 1
chr11:43447337|43447610 hsa-miR-199b-5p 0 0 1
chr11:43447337|43447610 hsa-miR-369-3p 0 0 1
chr11:43447337|43447610 hsa-miR-323-5p 0 0 1
chr11:43447337|43447610 hsa-miR-1269 0 0 1
chr11:43447337|43447610 hsa-miR-516b 0 0 1
chr11:43447337|43447610 hsa-miR-608 1 0 0
chr11:43447337|43447610 hsa-miR-762 1 0 0
chr11:43447337|43447610 hsa-miR-760 1 0 0
chr11:43447337|43447610 hsa-miR-3138 1 0 0
chr11:43447337|43447610 hsa-miR-3911 1 0 0
chr11:43447337|43447610 hsa-miR-3917 1 0 0
chr11:43447337|43447610 hsa-miR-1587 1 0 0
chr11:43447337|43447610 hsa-miR-4656 1 0 0
chr11:43447337|43447610 hsa-miR-4706 1 0 0
chr11:43447337|43447610 hsa-miR-4741 1 0 0
chr11:43447337|43447610 hsa-miR-5787 1 0 0
chr11:43447337|43447610 hsa-miR-6081 1 0 0
chr11:43447337|43447610 hsa-miR-6085 1 0 0
chr11:43447337|43447610 hsa-miR-8052 1 0 0
chr11:43447337|43447610 hsa-miR-8089 1 0 0
chr11:43447337|43447610 hsa-miR-29b-1-5p 1 0 0
chr11:43447337|43447610 hsa-miR-4433b-3p 1 0 0
chr11:43447337|43447610 hsa-miR-122-5p 1 0 0
chr11:43447337|43447610 hsa-miR-4700-3p 1 0 0
chr11:43447337|43447610 hsa-miR-6747-5p 1 0 0
chr11:43447337|43447610 hsa-miR-4687-3p 1 0 0
chr11:43447337|43447610 hsa-miR-4695-5p 1 0 0
chr11:43447337|43447610 hsa-miR-659-3p 1 0 0
chr11:43447337|43447610 hsa-miR-6772-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6782-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6786-5p 1 0 0
chr11:43447337|43447610 hsa-miR-7109-5p 1 0 0
chr11:43447337|43447610 hsa-miR-1226-5p 1 0 0
chr11:43447337|43447610 hsa-miR-296-3p 1 0 0
chr11:43447337|43447610 hsa-miR-7850-5p 1 0 0
chr11:43447337|43447610 hsa-miR-593-3p 1 0 0
chr11:43447337|43447610 hsa-miR-7152-3p 1 0 0
chr11:43447337|43447610 hsa-miR-4638-5p 1 0 0
chr11:43447337|43447610 hsa-miR-4529-3p 1 0 0
chr11:43447337|43447610 hsa-miR-6768-3p 1 0 0
chr11:43447337|43447610 hsa-miR-6769b-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6816-5p 1 0 0
chr11:43447337|43447610 hsa-miR-1343-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6752-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6756-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6803-5p 1 0 0
chr11:43447337|43447610 hsa-miR-7110-5p 1 0 0
chr11:43447337|43447610 hsa-miR-10401-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6751-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6774-5p 1 0 0
chr11:43447337|43447610 hsa-miR-3620-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6846-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6848-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6736-5p 1 0 0
chr11:43447337|43447610 hsa-miR-4700-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6790-5p 1 0 0
chr11:43447337|43447610 hsa-miR-6849-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:43447337|43447610
ORF Type ORF1
Protein Length 75
Nucleotide Length 225
Protein Sequence MCIGGCLASSLAFTHWMVVALFPRYNNKNVSRYCQMSTPSRENHYYKEEQQGVMMLMKDYHLLPAPTTPPQSKNQ
Nucleotide Sequence CTGTGCATTGGAGGGTGTTTAGCATCATCTTTGGCCTTCACCCACTGGATGGTGGTAGCACTGTTCCCCAGATATAACAACAAAAATGTCTCCAGATATTGCCAAATGTCCACACCCAGTAGAGAGAACCACTACTATAAAGAAGAGCAGCAGGGAGTAATGATGTTAATGAAAGATTATCATCTCCTCCCAGCCCCCACCACACCACCACAGTCCAAGAACCAG
CircID chr11:43447337|43447610
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence MGGDDNLSLTSLLPAALLYSSGSLYWVWTFGNIWRHFCCYIWGTVLPPSSG
Nucleotide Sequence CTGGGAGGAGATGATAATCTTTCATTAACATCATTACTCCCTGCTGCTCTTCTTTATAGTAGTGGTTCTCTCTACTGGGTGTGGACATTTGGCAATATCTGGAGACATTTTTGTTGTTATATCTGGGGAACAGTGCTACCACCATCCAGTGGGTGA
CircID chr11:43447337|43447610
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MMLNTLQCTGQVPQKIIQPKMPIIP
Nucleotide Sequence ATGATGCTAAACACCCTCCAATGCACAGGACAGGTCCCTCAAAAAATTATCCAGCCCAAAATGCCAATAATACCA
CircID chr11:43447337|43447610
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MLLFFIVVVLSTGCGHLAISGDIFVVISGEQCYHHPVGEGQR
Nucleotide Sequence CTGCTGCTCTTCTTTATAGTAGTGGTTCTCTCTACTGGGTGTGGACATTTGGCAATATCTGGAGACATTTTTGTTGTTATATCTGGGGAACAGTGCTACCACCATCCAGTGGGTGAAGGCCAAAGATGA
CircID chr11:43447337|43447610
ORF Type ORF5
Protein Length 55
Nucleotide Length 165
Protein Sequence MGVDIWQYLETFLLLYLGNSATTIQWVKAKDDAKHPPMHRTGPSKNYPAQNANNT
Nucleotide Sequence CTGGGTGTGGACATTTGGCAATATCTGGAGACATTTTTGTTGTTATATCTGGGGAACAGTGCTACCACCATCCAGTGGGTGAAGGCCAAAGATGATGCTAAACACCCTCCAATGCACAGGACAGGTCCCTCAAAAAATTATCCAGCCCAAAATGCCAATAATACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab