CircRNA Information

General Information
circRNA Basic Information
CircID chr11:44930800|44930922
Strand -
CircType exon
Host Gene ENSG00000157570.10;
Algorism CIRI2;
Sequence GGGCAGGGATGGAAGGAGCAGTGTGATGTCTGCTCTCTTCTCTCCCCTCTGTCCCTCTTCAGGAAGAAAGAGCTCATTCTGTCTCACAAGCCACCGGCATCCTGTATCAGCTTCCAGCCTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:44930800|44930922 hsa-miR-185-5p 0 0 1
chr11:44930800|44930922 hsa-miR-185-3p 0 0 1
chr11:44930800|44930922 hsa-miR-1200 0 0 1
chr11:44930800|44930922 hsa-miR-1253 0 1 1
chr11:44930800|44930922 hsa-miR-671-5p 1 0 1
chr11:44930800|44930922 hsa-miR-485-5p 0 1 1
chr11:44930800|44930922 hsa-miR-556-5p 0 0 1
chr11:44930800|44930922 hsa-miR-499-3p 0 0 1
chr11:44930800|44930922 hsa-miR-650 1 0 0
chr11:44930800|44930922 hsa-miR-762 1 0 0
chr11:44930800|44930922 hsa-miR-920 1 0 0
chr11:44930800|44930922 hsa-miR-3154 1 0 0
chr11:44930800|44930922 hsa-miR-3166 0 1 0
chr11:44930800|44930922 hsa-miR-3175 0 1 0
chr11:44930800|44930922 hsa-miR-3188 1 0 0
chr11:44930800|44930922 hsa-miR-4298 1 1 0
chr11:44930800|44930922 hsa-miR-4306 0 1 0
chr11:44930800|44930922 hsa-miR-3652 1 1 0
chr11:44930800|44930922 hsa-miR-4430 1 0 0
chr11:44930800|44930922 hsa-miR-3135b 1 0 0
chr11:44930800|44930922 hsa-miR-4488 1 0 0
chr11:44930800|44930922 hsa-miR-4489 1 0 0
chr11:44930800|44930922 hsa-miR-4498 1 0 0
chr11:44930800|44930922 hsa-miR-4505 1 0 0
chr11:44930800|44930922 hsa-miR-4508 1 0 0
chr11:44930800|44930922 hsa-miR-4525 1 0 0
chr11:44930800|44930922 hsa-miR-1587 1 0 0
chr11:44930800|44930922 hsa-miR-4644 0 1 0
chr11:44930800|44930922 hsa-miR-4706 1 0 0
chr11:44930800|44930922 hsa-miR-5787 1 0 0
chr11:44930800|44930922 hsa-miR-6079 0 1 0
chr11:44930800|44930922 hsa-miR-6085 1 0 0
chr11:44930800|44930922 hsa-miR-6086 1 0 0
chr11:44930800|44930922 hsa-miR-6127 1 0 0
chr11:44930800|44930922 hsa-miR-6745 1 0 0
chr11:44930800|44930922 hsa-miR-8075 1 1 0
chr11:44930800|44930922 hsa-miR-8085 0 1 0
chr11:44930800|44930922 hsa-miR-138-5p 1 1 0
chr11:44930800|44930922 hsa-miR-150-3p 1 0 0
chr11:44930800|44930922 hsa-miR-6734-5p 0 1 0
chr11:44930800|44930922 hsa-miR-6765-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6894-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6799-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6089 1 0 0
chr11:44930800|44930922 hsa-miR-6873-5p 1 1 0
chr11:44930800|44930922 hsa-miR-6741-5p 1 0 0
chr11:44930800|44930922 hsa-miR-7845-5p 0 1 0
chr11:44930800|44930922 hsa-miR-3605-5p 1 0 0
chr11:44930800|44930922 hsa-miR-3126-5p 0 1 0
chr11:44930800|44930922 hsa-miR-6786-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6772-3p 0 1 0
chr11:44930800|44930922 hsa-miR-4446-3p 1 0 0
chr11:44930800|44930922 hsa-miR-149-3p 0 1 0
chr11:44930800|44930922 hsa-miR-423-5p 1 1 0
chr11:44930800|44930922 hsa-let-7e-5p 1 0 0
chr11:44930800|44930922 hsa-miR-4524a-3p 0 1 0
chr11:44930800|44930922 hsa-miR-5197-3p 0 1 0
chr11:44930800|44930922 hsa-miR-1207-5p 1 0 0
chr11:44930800|44930922 hsa-miR-5001-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6726-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6813-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6851-5p 1 0 0
chr11:44930800|44930922 hsa-miR-1249-5p 0 1 0
chr11:44930800|44930922 hsa-miR-6797-5p 1 1 0
chr11:44930800|44930922 hsa-miR-6875-5p 0 1 0
chr11:44930800|44930922 hsa-miR-7111-5p 0 1 0
chr11:44930800|44930922 hsa-miR-3620-5p 1 0 0
chr11:44930800|44930922 hsa-miR-4728-5p 1 1 0
chr11:44930800|44930922 hsa-miR-10526-3p 1 0 0
chr11:44930800|44930922 hsa-miR-1237-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6794-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6795-5p 0 1 0
chr11:44930800|44930922 hsa-miR-6846-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6848-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6858-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6887-5p 0 1 0
chr11:44930800|44930922 hsa-miR-939-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6731-5p 0 1 0
chr11:44930800|44930922 hsa-miR-7151-3p 1 0 0
chr11:44930800|44930922 hsa-miR-6891-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6849-5p 1 0 0
chr11:44930800|44930922 hsa-miR-6884-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:44930800|44930922
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MSLFRKKELILSHKPPASCISFQPP
Nucleotide Sequence CTGTCCCTCTTCAGGAAGAAAGAGCTCATTCTGTCTCACAAGCCACCGGCATCCTGTATCAGCTTCCAGCCTCCC
CircID chr11:44930800|44930922
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MSALFSPLCPSSGRKSSFCLTSHRHPVSASSL
Nucleotide Sequence ATGTCTGCTCTCTTCTCTCCCCTCTGTCCCTCTTCAGGAAGAAAGAGCTCATTCTGTCTCACAAGCCACCGGCATCCTGTATCAGCTTCCAGCCTC
CircID chr11:44930800|44930922
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MLSSLPSVPLQEERAHSVSQATGILYQLPAS
Nucleotide Sequence CTGCTCTCTTCTCTCCCCTCTGTCCCTCTTCAGGAAGAAAGAGCTCATTCTGTCTCACAAGCCACCGGCATCCTGTATCAGCTTCCAGCCTCC
CircID chr11:44930800|44930922
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MEADTGCRWLVRQNELFLPEEGQRGEKRADITLLLPSLP
Nucleotide Sequence CTGGAAGCTGATACAGGATGCCGGTGGCTTGTGAGACAGAATGAGCTCTTTCTTCCTGAAGAGGGACAGAGGGGAGAGAAGAGAGCAGACATCACACTGCTCCTTCCATCCCTGCCC
CircID chr11:44930800|44930922
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MSSFFLKRDRGERREQTSHCSFHPC
Nucleotide Sequence ATGAGCTCTTTCTTCCTGAAGAGGGACAGAGGGGAGAGAAGAGAGCAGACATCACACTGCTCCTTCCATCCCTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab