CircRNA Information

General Information
circRNA Basic Information
CircID chr11:44933602|44933730
Strand +
CircType exon
Host Gene ENSG00000175274.17;
Algorism CIRI2;
Sequence CTCCCCTCATCTTCCCCGCCCTGTCCAGCGCCCTGGCAAAGGCTGACAACTGGCTGTCTTGGGGCCGAACAGCCCCTGCCCTGCCTCTGAGGGCCCACCAGCCTGTGCTGCATACCCACCGCCCAGCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:44933602|44933730 hsa-miR-107 0 0 1
chr11:44933602|44933730 hsa-miR-575 0 0 1
chr11:44933602|44933730 hsa-miR-541-5p 0 0 1
chr11:44933602|44933730 hsa-miR-541-3p 0 0 1
chr11:44933602|44933730 hsa-miR-940 0 0 1
chr11:44933602|44933730 hsa-miR-1202 1 0 1
chr11:44933602|44933730 hsa-miR-1827 0 0 1
chr11:44933602|44933730 hsa-miR-296-5p 0 0 1
chr11:44933602|44933730 hsa-miR-423-5p 0 0 1
chr11:44933602|44933730 hsa-miR-654-5p 1 0 1
chr11:44933602|44933730 hsa-miR-1207-5p 1 0 1
chr11:44933602|44933730 hsa-miR-103 0 0 1
chr11:44933602|44933730 hsa-miR-138 0 0 1
chr11:44933602|44933730 hsa-miR-663 0 0 1
chr11:44933602|44933730 hsa-miR-422a 1 0 0
chr11:44933602|44933730 hsa-miR-612 1 0 0
chr11:44933602|44933730 hsa-miR-663a 1 0 0
chr11:44933602|44933730 hsa-miR-658 1 0 0
chr11:44933602|44933730 hsa-miR-762 1 0 0
chr11:44933602|44933730 hsa-miR-760 1 0 0
chr11:44933602|44933730 hsa-miR-1268a 1 0 0
chr11:44933602|44933730 hsa-miR-3138 1 0 0
chr11:44933602|44933730 hsa-miR-3141 1 0 0
chr11:44933602|44933730 hsa-miR-3147 1 0 0
chr11:44933602|44933730 hsa-miR-378c 1 0 0
chr11:44933602|44933730 hsa-miR-4298 1 0 0
chr11:44933602|44933730 hsa-miR-4259 1 0 0
chr11:44933602|44933730 hsa-miR-1268b 1 0 0
chr11:44933602|44933730 hsa-miR-378h 1 0 0
chr11:44933602|44933730 hsa-miR-4466 1 0 0
chr11:44933602|44933730 hsa-miR-4467 1 0 0
chr11:44933602|44933730 hsa-miR-4486 1 0 0
chr11:44933602|44933730 hsa-miR-4498 1 0 0
chr11:44933602|44933730 hsa-miR-4505 1 0 0
chr11:44933602|44933730 hsa-miR-1587 1 0 0
chr11:44933602|44933730 hsa-miR-3972 1 0 0
chr11:44933602|44933730 hsa-miR-4651 1 0 0
chr11:44933602|44933730 hsa-miR-4741 1 0 0
chr11:44933602|44933730 hsa-miR-5090 1 0 0
chr11:44933602|44933730 hsa-miR-5787 1 0 0
chr11:44933602|44933730 hsa-miR-6132 1 0 0
chr11:44933602|44933730 hsa-miR-6860 1 0 0
chr11:44933602|44933730 hsa-miR-7150 1 0 0
chr11:44933602|44933730 hsa-miR-8072 1 0 0
chr11:44933602|44933730 hsa-miR-6747-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6765-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6861-5p 1 0 0
chr11:44933602|44933730 hsa-miR-4687-3p 1 0 0
chr11:44933602|44933730 hsa-miR-6799-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6089 1 0 0
chr11:44933602|44933730 hsa-miR-3192-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6741-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6727-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6721-5p 1 0 0
chr11:44933602|44933730 hsa-miR-5589-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6793-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6805-5p 1 0 0
chr11:44933602|44933730 hsa-miR-2467-3p 1 0 0
chr11:44933602|44933730 hsa-miR-6821-5p 1 0 0
chr11:44933602|44933730 hsa-miR-5006-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6786-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6784-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6753-5p 1 0 0
chr11:44933602|44933730 hsa-miR-3127-5p 1 0 0
chr11:44933602|44933730 hsa-miR-1228-5p 1 0 0
chr11:44933602|44933730 hsa-miR-92b-5p 1 0 0
chr11:44933602|44933730 hsa-miR-3677-3p 1 0 0
chr11:44933602|44933730 hsa-miR-7112-5p 1 0 0
chr11:44933602|44933730 hsa-miR-1250-5p 1 0 0
chr11:44933602|44933730 hsa-miR-744-5p 1 0 0
chr11:44933602|44933730 hsa-miR-4746-3p 1 0 0
chr11:44933602|44933730 hsa-miR-4750-5p 1 0 0
chr11:44933602|44933730 hsa-miR-10400-5p 1 0 0
chr11:44933602|44933730 hsa-miR-4763-3p 1 0 0
chr11:44933602|44933730 hsa-miR-6769b-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6787-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6816-5p 1 0 0
chr11:44933602|44933730 hsa-miR-5001-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6743-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6752-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6756-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6769a-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6803-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6722-3p 1 0 0
chr11:44933602|44933730 hsa-miR-6808-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6879-5p 1 0 0
chr11:44933602|44933730 hsa-miR-1915-3p 1 0 0
chr11:44933602|44933730 hsa-miR-3620-5p 1 0 0
chr11:44933602|44933730 hsa-miR-5189-5p 1 0 0
chr11:44933602|44933730 hsa-miR-5196-5p 1 0 0
chr11:44933602|44933730 hsa-miR-10396b-5p 1 0 0
chr11:44933602|44933730 hsa-miR-1237-5p 1 0 0
chr11:44933602|44933730 hsa-miR-4685-5p 1 0 0
chr11:44933602|44933730 hsa-miR-4701-3p 1 0 0
chr11:44933602|44933730 hsa-miR-6846-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6848-5p 1 0 0
chr11:44933602|44933730 hsa-miR-3187-5p 1 0 0
chr11:44933602|44933730 hsa-miR-939-5p 1 0 0
chr11:44933602|44933730 hsa-miR-10394-3p 1 0 0
chr11:44933602|44933730 hsa-miR-1266-5p 1 0 0
chr11:44933602|44933730 hsa-miR-7151-3p 1 0 0
chr11:44933602|44933730 hsa-miR-4646-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6785-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6724-5p 1 0 0
chr11:44933602|44933730 hsa-miR-6837-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:44933602|44933730
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MAVLGPNSPCPASEGPPACAAYPPPS
Nucleotide Sequence CTGGCTGTCTTGGGGCCGAACAGCCCCTGCCCTGCCTCTGAGGGCCCACCAGCCTGTGCTGCATACCCACCGCCCAGC
CircID chr11:44933602|44933730
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MSSALAKADNWLSWGRTAPALPLRAHQPVLHTHRPA
Nucleotide Sequence CTGTCCAGCGCCCTGGCAAAGGCTGACAACTGGCTGTCTTGGGGCCGAACAGCCCCTGCCCTGCCTCTGAGGGCCCACCAGCCTGTGCTGCATACCCACCGCCCAGCT
CircID chr11:44933602|44933730
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MGGGYAAQAGGPSEAGQGLFGPKTASCQPLPGRWTGRGR
Nucleotide Sequence CTGGGCGGTGGGTATGCAGCACAGGCTGGTGGGCCCTCAGAGGCAGGGCAGGGGCTGTTCGGCCCCAAGACAGCCAGTTGTCAGCCTTTGCCAGGGCGCTGGACAGGGCGGGGAAGATGA
CircID chr11:44933602|44933730
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MQHRLVGPQRQGRGCSAPRQPVVSLCQGAGQGGEDEG
Nucleotide Sequence ATGCAGCACAGGCTGGTGGGCCCTCAGAGGCAGGGCAGGGGCTGTTCGGCCCCAAGACAGCCAGTTGTCAGCCTTTGCCAGGGCGCTGGACAGGGCGGGGAAGATGAGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab