CircRNA Information

General Information
circRNA Basic Information
CircID chr11:4599579|4599703
Strand +
CircType exon
Host Gene ENSG00000167333.11;
Algorism CIRI2;
Sequence CTGCCCAAGCCACCCCACTGCCGTTCCCTCTCTGAGCACAAGCTGGGCAAATCACTGTCCCTTGGACTCCAGGAGACCAGTGTCCTAGTCTTGCCTTTTTTCTCTAAGTGGCAGGATCAGAAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:4599579|4599703 hsa-miR-31-5p 0 0 1
chr11:4599579|4599703 hsa-miR-31-3p 0 0 1
chr11:4599579|4599703 hsa-miR-34a-5p 0 0 1
chr11:4599579|4599703 hsa-miR-34a-3p 0 0 1
chr11:4599579|4599703 hsa-miR-449a 0 1 1
chr11:4599579|4599703 hsa-miR-608 0 1 1
chr11:4599579|4599703 hsa-miR-635 0 0 1
chr11:4599579|4599703 hsa-miR-449b-5p 0 0 1
chr11:4599579|4599703 hsa-miR-449b-3p 0 0 1
chr11:4599579|4599703 hsa-miR-1303 0 0 1
chr11:4599579|4599703 hsa-miR-1292-5p 0 0 1
chr11:4599579|4599703 hsa-miR-1292-3p 0 0 1
chr11:4599579|4599703 hsa-miR-1197 0 1 1
chr11:4599579|4599703 hsa-miR-1289 0 1 1
chr11:4599579|4599703 hsa-miR-342-5p 0 0 1
chr11:4599579|4599703 hsa-miR-34c-5p 0 0 1
chr11:4599579|4599703 hsa-miR-218 0 0 1
chr11:4599579|4599703 hsa-miR-198 1 0 0
chr11:4599579|4599703 hsa-miR-933 1 0 0
chr11:4599579|4599703 hsa-miR-4309 0 1 0
chr11:4599579|4599703 hsa-miR-4255 1 0 0
chr11:4599579|4599703 hsa-miR-4270 1 0 0
chr11:4599579|4599703 hsa-miR-4467 1 0 0
chr11:4599579|4599703 hsa-miR-4696 0 1 0
chr11:4599579|4599703 hsa-miR-4739 1 0 0
chr11:4599579|4599703 hsa-miR-5192 1 0 0
chr11:4599579|4599703 hsa-miR-5739 1 0 0
chr11:4599579|4599703 hsa-miR-6090 1 0 0
chr11:4599579|4599703 hsa-miR-6127 1 0 0
chr11:4599579|4599703 hsa-miR-6133 1 0 0
chr11:4599579|4599703 hsa-miR-7150 1 0 0
chr11:4599579|4599703 hsa-miR-7704 1 0 0
chr11:4599579|4599703 hsa-miR-8059 1 0 0
chr11:4599579|4599703 hsa-miR-8062 0 1 0
chr11:4599579|4599703 hsa-miR-8080 0 1 0
chr11:4599579|4599703 hsa-miR-12119 1 0 0
chr11:4599579|4599703 hsa-miR-12120 1 0 0
chr11:4599579|4599703 hsa-miR-6734-5p 1 0 0
chr11:4599579|4599703 hsa-miR-7155-5p 0 1 0
chr11:4599579|4599703 hsa-miR-3192-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6873-5p 1 1 0
chr11:4599579|4599703 hsa-miR-6820-5p 1 0 0
chr11:4599579|4599703 hsa-miR-7845-5p 0 1 0
chr11:4599579|4599703 hsa-miR-3663-5p 0 1 0
chr11:4599579|4599703 hsa-miR-6742-5p 0 1 0
chr11:4599579|4599703 hsa-miR-6716-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6871-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6798-5p 1 0 0
chr11:4599579|4599703 hsa-miR-3934-3p 1 0 0
chr11:4599579|4599703 hsa-miR-6852-5p 0 1 0
chr11:4599579|4599703 hsa-miR-6757-3p 0 1 0
chr11:4599579|4599703 hsa-miR-885-3p 1 0 0
chr11:4599579|4599703 hsa-miR-92b-5p 1 0 0
chr11:4599579|4599703 hsa-miR-7854-3p 1 0 0
chr11:4599579|4599703 hsa-miR-4787-5p 1 0 0
chr11:4599579|4599703 hsa-miR-149-3p 1 0 0
chr11:4599579|4599703 hsa-miR-194-3p 0 1 0
chr11:4599579|4599703 hsa-miR-6832-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6761-5p 1 0 0
chr11:4599579|4599703 hsa-miR-3177-3p 1 0 0
chr11:4599579|4599703 hsa-miR-10400-5p 1 0 0
chr11:4599579|4599703 hsa-miR-1207-5p 1 0 0
chr11:4599579|4599703 hsa-miR-4763-3p 1 0 0
chr11:4599579|4599703 hsa-miR-6812-5p 0 1 0
chr11:4599579|4599703 hsa-miR-6737-5p 0 1 0
chr11:4599579|4599703 hsa-miR-6743-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6754-5p 1 0 0
chr11:4599579|4599703 hsa-miR-1249-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6774-5p 0 1 0
chr11:4599579|4599703 hsa-miR-6779-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6780a-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6797-5p 1 0 0
chr11:4599579|4599703 hsa-miR-4728-5p 1 0 0
chr11:4599579|4599703 hsa-miR-5196-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6780b-5p 1 0 0
chr11:4599579|4599703 hsa-miR-449c-5p 1 0 0
chr11:4599579|4599703 hsa-miR-4725-3p 1 0 0
chr11:4599579|4599703 hsa-miR-4749-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6738-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6794-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6883-5p 1 0 0
chr11:4599579|4599703 hsa-miR-3198 0 1 0
chr11:4599579|4599703 hsa-miR-6758-5p 1 1 0
chr11:4599579|4599703 hsa-miR-6856-5p 1 1 0
chr11:4599579|4599703 hsa-miR-1914-3p 1 0 0
chr11:4599579|4599703 hsa-miR-6750-5p 1 1 0
chr11:4599579|4599703 hsa-miR-6785-5p 1 0 0
chr11:4599579|4599703 hsa-miR-6822-5p 1 1 0
chr11:4599579|4599703 hsa-miR-6848-3p 0 1 0
chr11:4599579|4599703 hsa-miR-6843-3p 0 1 0
chr11:4599579|4599703 hsa-miR-4774-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:4599579|4599703
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence LPKPPHCRSLSEHKLGKSLSLGLQETSVLVLPFFSKWQDQK
Nucleotide Sequence CTGCCCAAGCCACCCCACTGCCGTTCCCTCTCTGAGCACAAGCTGGGCAAATCACTGTCCCTTGGACTCCAGGAGACCAGTGTCCTAGTCTTGCCTTTTTTCTCTAAGTGGCAGGATCAGAAA
CircID chr11:4599579|4599703
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MVSWSPRDSDLPSLCSERERQWGGLG
Nucleotide Sequence CTGGTCTCCTGGAGTCCAAGGGACAGTGATTTGCCCAGCTTGTGCTCAGAGAGGGAACGGCAGTGGGGTGGCTTGGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab