CircRNA Information

General Information
circRNA Basic Information
CircID chr11:46674099|46674404
Strand +
CircType exon
Host Gene ENSG00000175224.15;
Algorism CIRI2;
Sequence CTGGAGACAAACAGCTGGTCCCAGCCTGTCCCGGGGGTGCTGCAGGAGTCAGTCTAGGGCTCATTCCTTTCATGGCAGGTCTGAGGGGCAAGGGCTGGCCTTAACAGTTGCTTTACTTCTCCCAAGCTCAGCTCAAAGTCATGGCTGAGACTCTTCACAGATGGAGCCCTGGTGAAAGGCTGCTGCCACCTGTAGATGCCAAAGATTGCTGCCTCAGACAATGGCTAGGCCTTTCCATGCAAGGCCTTGGAAAGAGAGCAGTAGCTGAAATATGGGGGCATCAATAACTTACCAGGGGCCTTCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:46674099|46674404 hsa-miR-96-5p 0 0 1
chr11:46674099|46674404 hsa-miR-96-3p 0 0 1
chr11:46674099|46674404 hsa-miR-107 0 0 1
chr11:46674099|46674404 hsa-miR-197-5p 0 0 1
chr11:46674099|46674404 hsa-miR-197-3p 0 0 1
chr11:46674099|46674404 hsa-miR-182-5p 0 0 1
chr11:46674099|46674404 hsa-miR-182-3p 0 0 1
chr11:46674099|46674404 hsa-miR-345-5p 0 0 1
chr11:46674099|46674404 hsa-miR-345-3p 0 0 1
chr11:46674099|46674404 hsa-miR-488-5p 0 0 1
chr11:46674099|46674404 hsa-miR-488-3p 0 0 1
chr11:46674099|46674404 hsa-miR-552-5p 0 0 1
chr11:46674099|46674404 hsa-miR-552-3p 0 0 1
chr11:46674099|46674404 hsa-miR-558 0 0 1
chr11:46674099|46674404 hsa-miR-632 0 0 1
chr11:46674099|46674404 hsa-miR-1271-5p 0 0 1
chr11:46674099|46674404 hsa-miR-1271-3p 0 0 1
chr11:46674099|46674404 hsa-miR-766-5p 0 0 1
chr11:46674099|46674404 hsa-miR-766-3p 0 0 1
chr11:46674099|46674404 hsa-miR-1226-5p 0 0 1
chr11:46674099|46674404 hsa-miR-1226-3p 0 0 1
chr11:46674099|46674404 hsa-miR-1231 0 0 1
chr11:46674099|46674404 hsa-miR-1827 0 1 1
chr11:46674099|46674404 hsa-miR-139-5p 0 0 1
chr11:46674099|46674404 hsa-miR-1225-3p 1 0 1
chr11:46674099|46674404 hsa-miR-885-3p 1 0 1
chr11:46674099|46674404 hsa-miR-1184 0 1 1
chr11:46674099|46674404 hsa-miR-331-3p 0 0 1
chr11:46674099|46674404 hsa-miR-1233 0 0 1
chr11:46674099|46674404 hsa-miR-103 0 0 1
chr11:46674099|46674404 hsa-miR-9 0 0 1
chr11:46674099|46674404 hsa-miR-129-3p 0 0 1
chr11:46674099|46674404 hsa-miR-151-3p 0 0 1
chr11:46674099|46674404 hsa-miR-601 0 1 0
chr11:46674099|46674404 hsa-miR-650 1 0 0
chr11:46674099|46674404 hsa-miR-1913 1 0 0
chr11:46674099|46674404 hsa-miR-2117 0 1 0
chr11:46674099|46674404 hsa-miR-3131 1 0 0
chr11:46674099|46674404 hsa-miR-3135a 1 0 0
chr11:46674099|46674404 hsa-miR-548w 1 0 0
chr11:46674099|46674404 hsa-miR-3937 1 0 0
chr11:46674099|46674404 hsa-miR-4434 0 1 0
chr11:46674099|46674404 hsa-miR-4490 0 1 0
chr11:46674099|46674404 hsa-miR-4497 0 1 0
chr11:46674099|46674404 hsa-miR-4513 0 1 0
chr11:46674099|46674404 hsa-miR-1587 1 0 0
chr11:46674099|46674404 hsa-miR-4538 0 1 0
chr11:46674099|46674404 hsa-miR-4642 0 1 0
chr11:46674099|46674404 hsa-miR-4656 1 0 0
chr11:46674099|46674404 hsa-miR-4663 0 1 0
chr11:46674099|46674404 hsa-miR-4739 1 0 0
chr11:46674099|46674404 hsa-miR-5090 1 0 0
chr11:46674099|46674404 hsa-miR-5690 0 1 0
chr11:46674099|46674404 hsa-miR-6081 1 0 0
chr11:46674099|46674404 hsa-miR-8085 1 0 0
chr11:46674099|46674404 hsa-miR-12115 1 0 0
chr11:46674099|46674404 hsa-miR-12119 0 1 0
chr11:46674099|46674404 hsa-miR-92a-1-5p 0 1 0
chr11:46674099|46674404 hsa-miR-1247-3p 0 1 0
chr11:46674099|46674404 hsa-miR-6765-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6799-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6746-5p 1 0 0
chr11:46674099|46674404 hsa-miR-296-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6840-5p 0 1 0
chr11:46674099|46674404 hsa-miR-6787-3p 0 1 0
chr11:46674099|46674404 hsa-miR-1915-5p 0 1 0
chr11:46674099|46674404 hsa-miR-4753-3p 0 1 0
chr11:46674099|46674404 hsa-miR-6735-3p 1 0 0
chr11:46674099|46674404 hsa-miR-6835-5p 1 0 0
chr11:46674099|46674404 hsa-miR-7109-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6784-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6753-5p 1 0 0
chr11:46674099|46674404 hsa-miR-30c-2-3p 1 1 0
chr11:46674099|46674404 hsa-miR-7161-3p 1 0 0
chr11:46674099|46674404 hsa-miR-4733-3p 0 1 0
chr11:46674099|46674404 hsa-miR-6878-5p 0 1 0
chr11:46674099|46674404 hsa-miR-4740-5p 1 0 0
chr11:46674099|46674404 hsa-miR-7162-3p 1 0 0
chr11:46674099|46674404 hsa-miR-3065-3p 0 1 0
chr11:46674099|46674404 hsa-miR-7160-3p 1 0 0
chr11:46674099|46674404 hsa-miR-887-5p 1 0 0
chr11:46674099|46674404 hsa-miR-3922-5p 0 1 0
chr11:46674099|46674404 hsa-miR-4707-5p 1 0 0
chr11:46674099|46674404 hsa-miR-3158-3p 0 1 0
chr11:46674099|46674404 hsa-miR-208a-5p 0 1 0
chr11:46674099|46674404 hsa-miR-4749-3p 1 0 0
chr11:46674099|46674404 hsa-miR-5197-3p 0 1 0
chr11:46674099|46674404 hsa-miR-6768-3p 0 1 0
chr11:46674099|46674404 hsa-miR-130b-5p 0 1 0
chr11:46674099|46674404 hsa-miR-6851-3p 1 0 0
chr11:46674099|46674404 hsa-miR-5587-3p 0 1 0
chr11:46674099|46674404 hsa-miR-499b-5p 0 1 0
chr11:46674099|46674404 hsa-miR-3688-3p 0 1 0
chr11:46674099|46674404 hsa-miR-10400-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6812-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6865-5p 0 1 0
chr11:46674099|46674404 hsa-miR-6743-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6779-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6780a-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6788-5p 0 1 0
chr11:46674099|46674404 hsa-miR-3620-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6780b-5p 0 1 0
chr11:46674099|46674404 hsa-miR-4632-5p 1 0 0
chr11:46674099|46674404 hsa-miR-4649-5p 1 0 0
chr11:46674099|46674404 hsa-miR-4685-5p 1 1 0
chr11:46674099|46674404 hsa-miR-4725-3p 0 1 0
chr11:46674099|46674404 hsa-miR-6729-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6883-5p 1 0 0
chr11:46674099|46674404 hsa-miR-7151-3p 0 1 0
chr11:46674099|46674404 hsa-miR-4747-5p 0 1 0
chr11:46674099|46674404 hsa-miR-6724-5p 1 0 0
chr11:46674099|46674404 hsa-miR-6837-5p 0 1 0
chr11:46674099|46674404 hsa-miR-6817-5p 0 1 0
chr11:46674099|46674404 hsa-miR-129-1-3p 0 1 0
chr11:46674099|46674404 hsa-miR-129-2-3p 0 1 0
chr11:46674099|46674404 hsa-miR-6855-3p 0 1 0
chr11:46674099|46674404 hsa-miR-151a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr11:46674099|46674404
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MSRGCCRSQSRAHSFHGRSEGQGLALTVALLLPSSAQSHG
Nucleotide Sequence CTGTCCCGGGGGTGCTGCAGGAGTCAGTCTAGGGCTCATTCCTTTCATGGCAGGTCTGAGGGGCAAGGGCTGGCCTTAACAGTTGCTTTACTTCTCCCAAGCTCAGCTCAAAGTCATGGCTGA
CircID chr11:46674099|46674404
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MVPACPGGAAGVSLGLIPFMAGLRGKGWP
Nucleotide Sequence CTGGTCCCAGCCTGTCCCGGGGGTGCTGCAGGAGTCAGTCTAGGGCTCATTCCTTTCATGGCAGGTCTGAGGGGCAAGGGCTGGCCTTAA
CircID chr11:46674099|46674404
ORF Type ORF3
Protein Length 59
Nucleotide Length 180
Protein Sequence MLYFSQAQLKVMAETLHRWSPGERLLPPVDAKDCCLRQWLGLSMQGLGKRAVAEIWGHQ
Nucleotide Sequence TTGCTTTACTTCTCCCAAGCTCAGCTCAAAGTCATGGCTGAGACTCTTCACAGATGGAGCCCTGGTGAAAGGCTGCTGCCACCTGTAGATGCCAAAGATTGCTGCCTCAGACAATGGCTAGGCCTTTCCATGCAAGGCCTTGGAAAGAGAGCAGTAGCTGAAATATGGGGGCATCAATAA
CircID chr11:46674099|46674404
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MSEAAIFGIYRWQQPFTRAPSVKSLSHDFELSLGEVKQLLRPALAPQTCHERNEP
Nucleotide Sequence TTGTCTGAGGCAGCAATCTTTGGCATCTACAGGTGGCAGCAGCCTTTCACCAGGGCTCCATCTGTGAAGAGTCTCAGCCATGACTTTGAGCTGAGCTTGGGAGAAGTAAAGCAACTGTTAAGGCCAGCCCTTGCCCCTCAGACCTGCCATGAAAGGAATGAGCCCTAG
CircID chr11:46674099|46674404
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MERPSHCLRQQSLASTGGSSLSPGLHL
Nucleotide Sequence ATGGAAAGGCCTAGCCATTGTCTGAGGCAGCAATCTTTGGCATCTACAGGTGGCAGCAGCCTTTCACCAGGGCTCCATCTGTGA
CircID chr11:46674099|46674404
ORF Type ORF6
Protein Length 30
Nucleotide Length 90
Protein Sequence MPLRPAMKGMSPRLTPAAPPGQAGTSCLSP
Nucleotide Sequence TTGCCCCTCAGACCTGCCATGAAAGGAATGAGCCCTAGACTGACTCCTGCAGCACCCCCGGGACAGGCTGGGACCAGCTGTTTGTCTCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab