CircRNA Information

General Information
circRNA Basic Information
CircID chr11:46679601|46679717
Strand -
CircType exon
Host Gene ENSG00000175220.10;
Algorism CIRI2;
Sequence CTGCCCCAAGTCCAGCCCCAGGCCCAACAGAAGAGATGGGGACTCACTGAGGAAGCCCACCACATGGGGGTAGAGGTCAAAGGTGAGCAGGGGCTCAGGAAGCTCCCGGAGGAAGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:46679601|46679717 hsa-miR-192-5p 0 0 1
chr11:46679601|46679717 hsa-miR-192-3p 0 0 1
chr11:46679601|46679717 hsa-miR-215-5p 0 0 1
chr11:46679601|46679717 hsa-miR-215-3p 0 0 1
chr11:46679601|46679717 hsa-miR-422a 0 1 1
chr11:46679601|46679717 hsa-miR-661 0 1 1
chr11:46679601|46679717 hsa-miR-541-5p 0 0 1
chr11:46679601|46679717 hsa-miR-541-3p 0 0 1
chr11:46679601|46679717 hsa-miR-920 0 0 1
chr11:46679601|46679717 hsa-miR-1178-5p 0 0 1
chr11:46679601|46679717 hsa-miR-1178-3p 0 0 1
chr11:46679601|46679717 hsa-miR-1236-5p 0 0 1
chr11:46679601|46679717 hsa-miR-1236-3p 0 0 1
chr11:46679601|46679717 hsa-miR-1200 0 1 1
chr11:46679601|46679717 hsa-miR-1267 0 0 1
chr11:46679601|46679717 hsa-miR-1225-3p 1 1 1
chr11:46679601|46679717 hsa-miR-486-3p 0 0 1
chr11:46679601|46679717 hsa-miR-654-5p 0 0 1
chr11:46679601|46679717 hsa-miR-767-3p 0 0 1
chr11:46679601|46679717 hsa-miR-516a-3p 0 0 1
chr11:46679601|46679717 hsa-miR-1233 0 0 1
chr11:46679601|46679717 hsa-miR-378 0 0 1
chr11:46679601|46679717 hsa-miR-762 0 1 0
chr11:46679601|46679717 hsa-miR-2861 0 1 0
chr11:46679601|46679717 hsa-miR-378b 0 1 0
chr11:46679601|46679717 hsa-miR-378c 0 1 0
chr11:46679601|46679717 hsa-miR-378e 0 1 0
chr11:46679601|46679717 hsa-miR-378f 0 1 0
chr11:46679601|46679717 hsa-miR-378h 0 1 0
chr11:46679601|46679717 hsa-miR-378i 0 1 0
chr11:46679601|46679717 hsa-miR-6749-3p 1 0 0
chr11:46679601|46679717 hsa-miR-210-5p 0 1 0
chr11:46679601|46679717 hsa-miR-6875-3p 1 0 0
chr11:46679601|46679717 hsa-miR-6845-3p 1 0 0
chr11:46679601|46679717 hsa-miR-185-3p 0 1 0
chr11:46679601|46679717 hsa-miR-6852-5p 0 1 0
chr11:46679601|46679717 hsa-miR-939-3p 1 1 0
chr11:46679601|46679717 hsa-miR-3667-3p 1 0 0
chr11:46679601|46679717 hsa-miR-6749-5p 1 1 0
chr11:46679601|46679717 hsa-miR-6821-3p 0 1 0
chr11:46679601|46679717 hsa-miR-937-5p 1 0 0
chr11:46679601|46679717 hsa-miR-6769a-3p 0 1 0
chr11:46679601|46679717 hsa-miR-6782-3p 0 1 0
chr11:46679601|46679717 hsa-miR-3160-5p 0 1 0
chr11:46679601|46679717 hsa-miR-6759-3p 1 1 0
chr11:46679601|46679717 hsa-miR-5001-5p 0 1 0
chr11:46679601|46679717 hsa-miR-3620-5p 1 0 0
chr11:46679601|46679717 hsa-miR-6846-5p 0 1 0
chr11:46679601|46679717 hsa-miR-1199-5p 0 1 0
chr11:46679601|46679717 hsa-miR-378a-3p 0 1 0
chr11:46679601|46679717 hsa-miR-6724-5p 1 0 0
chr11:46679601|46679717 hsa-miR-6791-5p 1 1 0
chr11:46679601|46679717 hsa-miR-6792-3p 1 0 0
chr11:46679601|46679717 hsa-miR-6810-3p 1 1 0
chr11:46679601|46679717 hsa-miR-125a-5p 0 1 0
chr11:46679601|46679717 hsa-miR-6751-3p 0 1 0
chr11:46679601|46679717 hsa-miR-6783-3p 0 1 0
chr11:46679601|46679717 hsa-miR-4691-5p 1 0 0
chr11:46679601|46679717 hsa-miR-6827-3p 0 1 0
chr11:46679601|46679717 hsa-miR-378d 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:46679601|46679717
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence LPQVQPQAQQKRWGLTEEAHHMGVEVKGEQGLRKLPEEG
Nucleotide Sequence CTGCCCCAAGTCCAGCCCCAGGCCCAACAGAAGAGATGGGGACTCACTGAGGAAGCCCACCACATGGGGGTAGAGGTCAAAGGTGAGCAGGGGCTCAGGAAGCTCCCGGAGGAAGGT
CircID chr11:46679601|46679717
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MLTFDLYPHVVGFLSESPSLLLGLGLDLGQ
Nucleotide Sequence CTGCTCACCTTTGACCTCTACCCCCATGTGGTGGGCTTCCTCAGTGAGTCCCCATCTCTTCTGTTGGGCCTGGGGCTGGACTTGGGGCAG
CircID chr11:46679601|46679717
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MSPCSPLTSTPMWWASSVSPHLFCWAWGWTWG
Nucleotide Sequence CTGAGCCCCTGCTCACCTTTGACCTCTACCCCCATGTGGTGGGCTTCCTCAGTGAGTCCCCATCTCTTCTGTTGGGCCTGGGGCTGGACTTGGGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab