CircRNA Information

General Information
circRNA Basic Information
CircID chr11:47148144|47148318
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTCATAGCGGCCTTTTTCCTCCCACCTGGAGAAGGTAACCAGACATCGTGTCATCGCTGCTTCTCTCATGGCCCTGACATTCAAACAAAAACCCTAGAGGTGCACTGTGAGCCCAAACAGACATGGGGACACCCTTCAGCCACCCCATGACTGCCACCTTGACCTGGGGACACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:47148144|47148318 hsa-miR-27a-5p 0 0 1
chr11:47148144|47148318 hsa-miR-27a-3p 0 0 1
chr11:47148144|47148318 hsa-miR-148a-5p 0 0 1
chr11:47148144|47148318 hsa-miR-148a-3p 0 0 1
chr11:47148144|47148318 hsa-miR-34a-5p 0 0 1
chr11:47148144|47148318 hsa-miR-34a-3p 0 0 1
chr11:47148144|47148318 hsa-miR-27b-5p 0 0 1
chr11:47148144|47148318 hsa-miR-27b-3p 0 0 1
chr11:47148144|47148318 hsa-miR-152-5p 0 0 1
chr11:47148144|47148318 hsa-miR-152-3p 0 0 1
chr11:47148144|47148318 hsa-miR-148b-5p 0 0 1
chr11:47148144|47148318 hsa-miR-148b-3p 0 0 1
chr11:47148144|47148318 hsa-miR-425-5p 0 0 1
chr11:47148144|47148318 hsa-miR-425-3p 0 0 1
chr11:47148144|47148318 hsa-miR-449a 0 0 1
chr11:47148144|47148318 hsa-miR-503-5p 0 0 1
chr11:47148144|47148318 hsa-miR-503-3p 0 0 1
chr11:47148144|47148318 hsa-miR-608 1 1 1
chr11:47148144|47148318 hsa-miR-449b-5p 0 0 1
chr11:47148144|47148318 hsa-miR-449b-3p 0 0 1
chr11:47148144|47148318 hsa-miR-766-5p 0 0 1
chr11:47148144|47148318 hsa-miR-766-3p 0 0 1
chr11:47148144|47148318 hsa-miR-1231 0 0 1
chr11:47148144|47148318 hsa-miR-296-3p 1 0 1
chr11:47148144|47148318 hsa-miR-409-5p 0 0 1
chr11:47148144|47148318 hsa-miR-654-3p 0 1 1
chr11:47148144|47148318 hsa-miR-342-5p 0 0 1
chr11:47148144|47148318 hsa-miR-34c-5p 0 0 1
chr11:47148144|47148318 hsa-miR-515-5p 0 0 1
chr11:47148144|47148318 hsa-miR-128 0 0 1
chr11:47148144|47148318 hsa-miR-1308 0 0 1
chr11:47148144|47148318 hsa-miR-638 1 0 0
chr11:47148144|47148318 hsa-miR-1182 1 0 0
chr11:47148144|47148318 hsa-miR-2110 1 0 0
chr11:47148144|47148318 hsa-miR-4284 0 1 0
chr11:47148144|47148318 hsa-miR-3918 1 1 0
chr11:47148144|47148318 hsa-miR-4437 0 1 0
chr11:47148144|47148318 hsa-miR-4450 1 0 0
chr11:47148144|47148318 hsa-miR-4651 0 1 0
chr11:47148144|47148318 hsa-miR-4669 1 0 0
chr11:47148144|47148318 hsa-miR-4739 1 0 0
chr11:47148144|47148318 hsa-miR-6745 1 0 0
chr11:47148144|47148318 hsa-miR-12128 1 0 0
chr11:47148144|47148318 hsa-miR-128-3p 0 1 0
chr11:47148144|47148318 hsa-miR-7155-5p 1 0 0
chr11:47148144|47148318 hsa-miR-6857-5p 1 0 0
chr11:47148144|47148318 hsa-miR-6880-5p 1 0 0
chr11:47148144|47148318 hsa-miR-6890-5p 0 1 0
chr11:47148144|47148318 hsa-miR-6727-5p 1 0 0
chr11:47148144|47148318 hsa-miR-30b-3p 0 1 0
chr11:47148144|47148318 hsa-miR-193b-5p 1 0 0
chr11:47148144|47148318 hsa-miR-4640-5p 1 0 0
chr11:47148144|47148318 hsa-miR-3127-5p 0 1 0
chr11:47148144|47148318 hsa-miR-149-3p 1 0 0
chr11:47148144|47148318 hsa-miR-6895-5p 0 1 0
chr11:47148144|47148318 hsa-miR-216a-3p 0 1 0
chr11:47148144|47148318 hsa-miR-1296-5p 1 0 0
chr11:47148144|47148318 hsa-miR-2355-5p 0 1 0
chr11:47148144|47148318 hsa-miR-513b-3p 0 1 0
chr11:47148144|47148318 hsa-miR-1233-5p 1 1 0
chr11:47148144|47148318 hsa-miR-1273h-5p 1 1 0
chr11:47148144|47148318 hsa-miR-6778-5p 1 1 0
chr11:47148144|47148318 hsa-miR-6812-5p 0 1 0
chr11:47148144|47148318 hsa-miR-6865-5p 0 1 0
chr11:47148144|47148318 hsa-miR-6756-5p 1 0 0
chr11:47148144|47148318 hsa-miR-1249-5p 1 0 0
chr11:47148144|47148318 hsa-miR-6780a-5p 0 1 0
chr11:47148144|47148318 hsa-miR-6788-5p 1 1 0
chr11:47148144|47148318 hsa-miR-6797-5p 1 1 0
chr11:47148144|47148318 hsa-miR-7111-5p 1 0 0
chr11:47148144|47148318 hsa-miR-4728-5p 1 1 0
chr11:47148144|47148318 hsa-miR-6836-5p 1 0 0
chr11:47148144|47148318 hsa-miR-6795-5p 1 0 0
chr11:47148144|47148318 hsa-miR-1266-5p 1 0 0
chr11:47148144|47148318 hsa-miR-6856-5p 1 0 0
chr11:47148144|47148318 hsa-miR-6762-5p 1 1 0
chr11:47148144|47148318 hsa-miR-6837-5p 1 1 0
chr11:47148144|47148318 hsa-miR-3059-3p 0 1 0
chr11:47148144|47148318 hsa-miR-3681-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr11:47148144|47148318
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MNVRAMREAAMTRCLVTFSRWEEKGRYE
Nucleotide Sequence TTGAATGTCAGGGCCATGAGAGAAGCAGCGATGACACGATGTCTGGTTACCTTCTCCAGGTGGGAGGAAAAAGGCCGCTATGAA
CircID chr11:47148144|47148318
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MGWLKGVPMSVWAHSAPLGFLFECQGHERSSDDTMSGYLLQVGGKRPL
Nucleotide Sequence ATGGGGTGGCTGAAGGGTGTCCCCATGTCTGTTTGGGCTCACAGTGCACCTCTAGGGTTTTTGTTTGAATGTCAGGGCCATGAGAGAAGCAGCGATGACACGATGTCTGGTTACCTTCTCCAGGTGGGAGGAAAAAGGCCGCTATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab