CircRNA Information

General Information
circRNA Basic Information
CircID chr11:5696222|5696366
Strand +
CircType exon
Host Gene ENSG00000132274.14;
Algorism CIRI2;
Sequence TCCTTGATCTTTGCAGTGATGCAGGCTTGGCAGAAGCTGTGGCCACAATCTAGGCTCAGAGGTTCTGTCAGGAGCTCCAGGCAGATGGGGCAGGTCACCTCCTTCTCTATGTCTACCTTTACTGAGAAATCCATTGCACTGCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:5696222|5696366 hsa-miR-148a-5p 0 0 1
chr11:5696222|5696366 hsa-miR-148a-3p 0 0 1
chr11:5696222|5696366 hsa-miR-130a-5p 0 0 1
chr11:5696222|5696366 hsa-miR-130a-3p 0 0 1
chr11:5696222|5696366 hsa-miR-152-5p 0 0 1
chr11:5696222|5696366 hsa-miR-152-3p 0 0 1
chr11:5696222|5696366 hsa-miR-301a-5p 0 0 1
chr11:5696222|5696366 hsa-miR-301a-3p 0 0 1
chr11:5696222|5696366 hsa-miR-130b-5p 0 0 1
chr11:5696222|5696366 hsa-miR-130b-3p 0 0 1
chr11:5696222|5696366 hsa-miR-376c-5p 0 0 1
chr11:5696222|5696366 hsa-miR-376c-3p 0 0 1
chr11:5696222|5696366 hsa-miR-379-5p 0 0 1
chr11:5696222|5696366 hsa-miR-379-3p 0 0 1
chr11:5696222|5696366 hsa-miR-148b-5p 0 0 1
chr11:5696222|5696366 hsa-miR-148b-3p 0 0 1
chr11:5696222|5696366 hsa-miR-527 0 0 1
chr11:5696222|5696366 hsa-miR-588 0 0 1
chr11:5696222|5696366 hsa-miR-596 0 0 1
chr11:5696222|5696366 hsa-miR-631 0 0 1
chr11:5696222|5696366 hsa-miR-661 0 0 1
chr11:5696222|5696366 hsa-miR-454-5p 0 0 1
chr11:5696222|5696366 hsa-miR-454-3p 0 0 1
chr11:5696222|5696366 hsa-miR-301b-5p 0 0 1
chr11:5696222|5696366 hsa-miR-301b-3p 0 0 1
chr11:5696222|5696366 hsa-miR-663b 0 0 1
chr11:5696222|5696366 hsa-miR-1290 0 0 1
chr11:5696222|5696366 hsa-miR-1246 0 0 1
chr11:5696222|5696366 hsa-miR-548m 0 0 1
chr11:5696222|5696366 hsa-miR-324-3p 0 0 1
chr11:5696222|5696366 hsa-miR-876-5p 0 0 1
chr11:5696222|5696366 hsa-miR-518a-5p 0 0 1
chr11:5696222|5696366 hsa-miR-1254 0 0 1
chr11:5696222|5696366 hsa-miR-936 0 1 0
chr11:5696222|5696366 hsa-miR-1913 0 1 0
chr11:5696222|5696366 hsa-miR-3135a 0 1 0
chr11:5696222|5696366 hsa-miR-4295 0 1 0
chr11:5696222|5696366 hsa-miR-4254 0 1 0
chr11:5696222|5696366 hsa-miR-4519 0 1 0
chr11:5696222|5696366 hsa-miR-4526 0 1 0
chr11:5696222|5696366 hsa-miR-4533 0 1 0
chr11:5696222|5696366 hsa-miR-6081 0 1 0
chr11:5696222|5696366 hsa-miR-9500 0 1 0
chr11:5696222|5696366 hsa-miR-8071 1 0 0
chr11:5696222|5696366 hsa-miR-197-5p 1 0 0
chr11:5696222|5696366 hsa-miR-3189-5p 0 1 0
chr11:5696222|5696366 hsa-miR-4697-3p 1 0 0
chr11:5696222|5696366 hsa-miR-3691-3p 0 1 0
chr11:5696222|5696366 hsa-miR-7854-3p 0 1 0
chr11:5696222|5696366 hsa-miR-4727-5p 0 1 0
chr11:5696222|5696366 hsa-miR-6831-5p 1 1 0
chr11:5696222|5696366 hsa-miR-4769-5p 1 0 0
chr11:5696222|5696366 hsa-miR-4653-5p 0 1 0
chr11:5696222|5696366 hsa-miR-3927-3p 0 1 0
chr11:5696222|5696366 hsa-miR-499b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:5696222|5696366
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MIFAVMQAWQKLWPQSRLRGSVRSSRQMGQVTSFSMSTFTEKSIALL
Nucleotide Sequence TTGATCTTTGCAGTGATGCAGGCTTGGCAGAAGCTGTGGCCACAATCTAGGCTCAGAGGTTCTGTCAGGAGCTCCAGGCAGATGGGGCAGGTCACCTCCTTCTCTATGTCTACCTTTACTGAGAAATCCATTGCACTGCTC
CircID chr11:5696222|5696366
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MSGAPGRWGRSPPSLCLPLLRNPLHCS
Nucleotide Sequence CTGTCAGGAGCTCCAGGCAGATGGGGCAGGTCACCTCCTTCTCTATGTCTACCTTTACTGAGAAATCCATTGCACTGCTCC
CircID chr11:5696222|5696366
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MPHLPGAPDRTSEPRLWPQLLPSLHHCKDQG
Nucleotide Sequence CTGCCCCATCTGCCTGGAGCTCCTGACAGAACCTCTGAGCCTAGATTGTGGCCACAGCTTCTGCCAAGCCTGCATCACTGCAAAGATCAAGGA
CircID chr11:5696222|5696366
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MDFSVKVDIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIK
Nucleotide Sequence ATGGATTTCTCAGTAAAGGTAGACATAGAGAAGGAGGTGACCTGCCCCATCTGCCTGGAGCTCCTGACAGAACCTCTGAGCCTAGATTGTGGCCACAGCTTCTGCCAAGCCTGCATCACTGCAAAGATCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab