CircRNA Information

General Information
circRNA Basic Information
CircID chr11:5707999|5708140
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTTGCCCTATTTCTCTCCATCCAAGATCACTGTCTCTTTCACCTTTCACCATACTTGCTGACGCACTTGGACCCTCTTCCCTGAGGACAGTAGAGGGGAGATGCCTGACACTGGAGTCCAGAGAAATGTGCTCATGTCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:5707999|5708140 hsa-miR-185-5p 0 0 1
chr11:5707999|5708140 hsa-miR-185-3p 0 0 1
chr11:5707999|5708140 hsa-miR-326 0 0 1
chr11:5707999|5708140 hsa-miR-422a 0 1 1
chr11:5707999|5708140 hsa-miR-488-5p 0 0 1
chr11:5707999|5708140 hsa-miR-488-3p 0 0 1
chr11:5707999|5708140 hsa-miR-432-5p 0 0 1
chr11:5707999|5708140 hsa-miR-432-3p 0 0 1
chr11:5707999|5708140 hsa-miR-539-5p 0 0 1
chr11:5707999|5708140 hsa-miR-539-3p 0 0 1
chr11:5707999|5708140 hsa-miR-545-5p 0 0 1
chr11:5707999|5708140 hsa-miR-545-3p 0 0 1
chr11:5707999|5708140 hsa-miR-1266-5p 0 0 1
chr11:5707999|5708140 hsa-miR-1266-3p 0 0 1
chr11:5707999|5708140 hsa-miR-1825 0 0 1
chr11:5707999|5708140 hsa-miR-199a-5p 0 1 1
chr11:5707999|5708140 hsa-miR-508-5p 0 1 1
chr11:5707999|5708140 hsa-miR-199b-5p 0 1 1
chr11:5707999|5708140 hsa-miR-330-5p 0 0 1
chr11:5707999|5708140 hsa-miR-378 0 0 1
chr11:5707999|5708140 hsa-miR-1245 0 0 1
chr11:5707999|5708140 hsa-miR-184 1 0 0
chr11:5707999|5708140 hsa-miR-3132 1 0 0
chr11:5707999|5708140 hsa-miR-378b 0 1 0
chr11:5707999|5708140 hsa-miR-1193 1 0 0
chr11:5707999|5708140 hsa-miR-378c 0 1 0
chr11:5707999|5708140 hsa-miR-4306 0 1 0
chr11:5707999|5708140 hsa-miR-3935 0 1 0
chr11:5707999|5708140 hsa-miR-378e 0 1 0
chr11:5707999|5708140 hsa-miR-378f 0 1 0
chr11:5707999|5708140 hsa-miR-4428 0 1 0
chr11:5707999|5708140 hsa-miR-4430 1 0 0
chr11:5707999|5708140 hsa-miR-378h 1 1 0
chr11:5707999|5708140 hsa-miR-4518 0 1 0
chr11:5707999|5708140 hsa-miR-4534 1 0 0
chr11:5707999|5708140 hsa-miR-378i 0 1 0
chr11:5707999|5708140 hsa-miR-4644 1 1 0
chr11:5707999|5708140 hsa-miR-6745 1 0 0
chr11:5707999|5708140 hsa-miR-9500 0 1 0
chr11:5707999|5708140 hsa-miR-12128 0 1 0
chr11:5707999|5708140 hsa-miR-7106-5p 1 0 0
chr11:5707999|5708140 hsa-miR-25-5p 1 0 0
chr11:5707999|5708140 hsa-miR-6728-5p 1 0 0
chr11:5707999|5708140 hsa-miR-6833-5p 1 0 0
chr11:5707999|5708140 hsa-miR-1236-5p 1 0 0
chr11:5707999|5708140 hsa-miR-6880-5p 1 1 0
chr11:5707999|5708140 hsa-miR-6730-5p 1 1 0
chr11:5707999|5708140 hsa-miR-197-5p 1 0 0
chr11:5707999|5708140 hsa-miR-6748-5p 1 0 0
chr11:5707999|5708140 hsa-miR-3190-3p 1 1 0
chr11:5707999|5708140 hsa-miR-7111-3p 0 1 0
chr11:5707999|5708140 hsa-miR-3925-3p 0 1 0
chr11:5707999|5708140 hsa-miR-6826-3p 0 1 0
chr11:5707999|5708140 hsa-miR-6733-3p 0 1 0
chr11:5707999|5708140 hsa-miR-6812-5p 1 0 0
chr11:5707999|5708140 hsa-miR-6819-5p 1 0 0
chr11:5707999|5708140 hsa-miR-1249-5p 1 0 0
chr11:5707999|5708140 hsa-miR-4747-5p 1 0 0
chr11:5707999|5708140 hsa-miR-378a-3p 0 1 0
chr11:5707999|5708140 hsa-miR-10395-5p 1 1 0
chr11:5707999|5708140 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:5707999|5708140
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MSLSPFTILADALGPSSLRTVEGRCLTLESREMCSCL
Nucleotide Sequence CTGTCTCTTTCACCTTTCACCATACTTGCTGACGCACTTGGACCCTCTTCCCTGAGGACAGTAGAGGGGAGATGCCTGACACTGGAGTCCAGAGAAATGTGCTCATGTCTA
CircID chr11:5707999|5708140
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MSTFLWTPVSGISPLLSSGKRVQVRQQVW
Nucleotide Sequence ATGAGCACATTTCTCTGGACTCCAGTGTCAGGCATCTCCCCTCTACTGTCCTCAGGGAAGAGGGTCCAAGTGCGTCAGCAAGTATGGTGA
CircID chr11:5707999|5708140
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MDSSVRHLPSTVLREEGPSASASMVKGERDSDLGWREIGQ
Nucleotide Sequence CTGGACTCCAGTGTCAGGCATCTCCCCTCTACTGTCCTCAGGGAAGAGGGTCCAAGTGCGTCAGCAAGTATGGTGAAAGGTGAAAGAGACAGTGATCTTGGATGGAGAGAAATAGGGCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab