CircRNA Information

General Information
circRNA Basic Information
CircID chr11:57308796|57308926
Strand -
CircType exon
Host Gene ENSG00000149115.12;
Algorism CIRI2;
Sequence CCCAAGCTCTTTGGACTCTCCAGGACTGCAGACTGCCCCTGGGGCCATGTTTCTCAGCCCAAGGTCAGGTGTCCAGTCTGCCTGTCCAACTCCACGCTCCCTTGATTTAAGGAACTCTCCGGCCTCCACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr11:57308796|57308926 hsa-miR-185-5p 0 0 1
chr11:57308796|57308926 hsa-miR-185-3p 0 0 1
chr11:57308796|57308926 hsa-miR-494-5p 0 0 1
chr11:57308796|57308926 hsa-miR-494-3p 0 0 1
chr11:57308796|57308926 hsa-miR-539-5p 0 0 1
chr11:57308796|57308926 hsa-miR-539-3p 0 0 1
chr11:57308796|57308926 hsa-miR-571 0 0 1
chr11:57308796|57308926 hsa-miR-622 0 1 1
chr11:57308796|57308926 hsa-miR-635 0 1 1
chr11:57308796|57308926 hsa-miR-650 0 0 1
chr11:57308796|57308926 hsa-miR-1205 0 0 1
chr11:57308796|57308926 hsa-miR-1276 0 0 1
chr11:57308796|57308926 hsa-miR-486-3p 0 1 1
chr11:57308796|57308926 hsa-miR-1184 0 0 1
chr11:57308796|57308926 hsa-miR-762 1 0 0
chr11:57308796|57308926 hsa-miR-3147 0 1 0
chr11:57308796|57308926 hsa-miR-4251 0 1 0
chr11:57308796|57308926 hsa-miR-4270 1 0 0
chr11:57308796|57308926 hsa-miR-3654 0 1 0
chr11:57308796|57308926 hsa-miR-3911 0 1 0
chr11:57308796|57308926 hsa-miR-4443 0 1 0
chr11:57308796|57308926 hsa-miR-4494 0 1 0
chr11:57308796|57308926 hsa-miR-4514 0 1 0
chr11:57308796|57308926 hsa-miR-4656 1 1 0
chr11:57308796|57308926 hsa-miR-4688 0 1 0
chr11:57308796|57308926 hsa-miR-4692 0 1 0
chr11:57308796|57308926 hsa-miR-4739 1 0 0
chr11:57308796|57308926 hsa-miR-5192 1 0 0
chr11:57308796|57308926 hsa-miR-5739 1 0 0
chr11:57308796|57308926 hsa-miR-6090 1 1 0
chr11:57308796|57308926 hsa-miR-12115 0 1 0
chr11:57308796|57308926 hsa-miR-3150a-3p 1 0 0
chr11:57308796|57308926 hsa-miR-6894-5p 1 0 0
chr11:57308796|57308926 hsa-miR-6089 1 1 0
chr11:57308796|57308926 hsa-miR-7847-3p 0 1 0
chr11:57308796|57308926 hsa-miR-23b-5p 1 0 0
chr11:57308796|57308926 hsa-miR-6796-5p 0 1 0
chr11:57308796|57308926 hsa-miR-23a-5p 1 0 0
chr11:57308796|57308926 hsa-miR-4743-5p 1 0 0
chr11:57308796|57308926 hsa-miR-4638-3p 0 1 0
chr11:57308796|57308926 hsa-miR-6781-5p 1 0 0
chr11:57308796|57308926 hsa-miR-3189-3p 1 1 0
chr11:57308796|57308926 hsa-miR-551b-5p 0 1 0
chr11:57308796|57308926 hsa-miR-4771 0 1 0
chr11:57308796|57308926 hsa-miR-4763-3p 1 0 0
chr11:57308796|57308926 hsa-miR-6812-5p 1 0 0
chr11:57308796|57308926 hsa-miR-6726-5p 1 0 0
chr11:57308796|57308926 hsa-miR-6774-5p 0 1 0
chr11:57308796|57308926 hsa-miR-3620-5p 1 0 0
chr11:57308796|57308926 hsa-miR-4632-5p 1 0 0
chr11:57308796|57308926 hsa-miR-4726-5p 1 0 0
chr11:57308796|57308926 hsa-miR-6777-5p 1 0 0
chr11:57308796|57308926 hsa-miR-6889-5p 1 0 0
chr11:57308796|57308926 hsa-miR-939-5p 1 0 0
chr11:57308796|57308926 hsa-miR-6511a-5p 0 1 0
chr11:57308796|57308926 hsa-miR-6855-5p 0 1 0
chr11:57308796|57308926 hsa-miR-10398-3p 1 0 0
chr11:57308796|57308926 hsa-miR-6790-5p 1 0 0
chr11:57308796|57308926 hsa-miR-3622a-3p 0 1 0
chr11:57308796|57308926 hsa-miR-6859-5p 0 1 0
chr11:57308796|57308926 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr11:57308796|57308926
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MDSPGLQTAPGAMFLSPRSGVQSACPTPRSLDLRNSPAST
Nucleotide Sequence TTGGACTCTCCAGGACTGCAGACTGCCCCTGGGGCCATGTTTCTCAGCCCAAGGTCAGGTGTCCAGTCTGCCTGTCCAACTCCACGCTCCCTTGATTTAAGGAACTCTCCGGCCTCCACA
CircID chr11:57308796|57308926
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MPLGPCFSAQGQVSSLPVQLHAPLI
Nucleotide Sequence CTGCCCCTGGGGCCATGTTTCTCAGCCCAAGGTCAGGTGTCCAGTCTGCCTGTCCAACTCCACGCTCCCTTGATTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab